Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.271745	D030005H02Rik	RIKEN cDNA D030005H02 gene	8		319908
Mm.271745	AI121036	expressed sequence AI121036	8		101996
Mm.271745	Nrp1	neuropilin 1	8	8 73.0 cM	18186
Mm.271745	C85351	expressed sequence C85351	8		97464
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 90 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGGCAGGGGT GGGCAGGGTT (5) TAAAGAAAAA (3) TGATCATACT TTTTGTACCC (4) 12.9 0.0129 Cb medulloblastoma GGGCAGGGTT (5) TACAGCCTGC TGATCATACT 13.8 0.0138 P8 GC+1d culture ATCAAGGGGG GGGCAGGGTT (5) TCTCTCTGTT TGACCTGTAG (4) TGATCATACT TTTTGTACCC (4) 15.9 0.0159 P8 GC+SHH+1d culture GGGCAGGGTT (5) TACAGCCTGC TCTCTCTGTT TGACCTGTAG (4) TGATCATACT 15.3 0.0153 3T3 fibroblasts GGGCAGGGTT (5) TCTCTCTGTT TGACCTGTAG (4) 28 0.028 E15 cortex TAAAGAAAAA (3) TACAGCCTGC TGACCTGTAG (4) 19.7 0.0197 P1 cortex GGGCAGGGTT (5) TCTCTCTGTT TGATCATACT 40.8 0.0408 Hypothalamus AAGCAATAAT (4) GGGCAGGGTT (5) TGATCATACT 9 0.009 E12.5 retina GGGCAGGGTT (5) TAAAGAAAAA (3) TACAGCCTGC TCTCTCTGTT TGACCTGTAG (4) TGATCATACT 20.8 0.0208 E14.5 retina ATCAAGGGGG TAAAGAAAAA (3) TGACCTGTAG (4) TGATCATACT TTTTGTACCC (4) 12.7 0.0127 E16.5 retina ATCAAGGGGG GGGCAGGGTT (5) TACAGCCTGC TGACCTGTAG (4) TGATCATACT 25.3 0.0253 E18.5 retina ATCAAGGGGG GGGCAGGGTT (5) TGATCATACT TTTTGTACCC (4) 21.8 0.0218 P0.5 retina AAGTCAGTCT GGGCAGGGTT (5) TCTCTCTGTT TGATCATACT 9.9 0.0099 P2.5 retina GGGCAGGGTT (5) TGACCTGTAG (4) TGATCATACT TTTTGTACCC (4) 22.9 0.0229 P4.5 retina ATCAAGGGGG GGGCAGGGTT (5) TAAAGAAAAA (3) TGACCTGTAG (4) TGATCATACT TTTTGTACCC (4) 41.7 0.0417 P6.5 retina ATCAAGGGGG GGGCAGGGGT GGGCAGGGTT (5) TAAAGAAAAA (3) TGACCTGTAG (4) TGATCATACT 20.1 0.0201 P10.5 crx- retina AAGCAATAAT (4) AAGTCAGTCT GGGCAGGGTT (5) TGACCTGTAG (4) TGATCATACT TTTTGTACCC (4) 13.2 0.0132 P10.5 crx+ retina GGGCAGGGGT TAAAGAAAAA (3) TCTCTCTGTT 5.7 0.0057 Adult retinal GGGCAGGGTT (5) TCTCTCTGTT TGACCTGTAG (4) TGATCATACT 11.3 0.0113 ONL AAGTCAGTCT GGGCAGGGTT (5) TAAAGAAAAA (3) TACAGCCTGC TCTCTCTGTT TGATCATACT 11.4 0.0114