Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.275555	Cnn3	calponin 3, acidic	3		71994
Gene Ontology	actin binding | calmodulin binding | smooth muscle contraction
Human Homolog	CNN3[calponin 3, acidic]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 133 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACTTTATTTA (2) ACTTTATTTT (3) ATCAGTGTGC ATTTAATGAA (2) CAGGTTTGGG (3) GAAAGGGCGG GAGGAGGAGG (2) TAATATTGAA (3) 42.3 0.0423 Cb medulloblastoma ACTTTATTTA (2) ACTTTATTTT (3) ATCAGTGAAA ATCAGTGTGA ATCAGTGTGC ATTTAATGAA (2) GAAAGGGCGG 27.6 0.0276 P8 GC+1d culture ACTTTATTTA (2) ACTTTATTTT (3) ATCAGTGTGA ATCAGTGTGC CAGGTTTGGG (3) GAAAGGGCGG TAATATTGAA (3) TAATCAGAAA (2) 46.6 0.0466 P8 GC+SHH+1d culture ACTTTATTTA (2) ATCAGTGTGA ATCAGTGTGC ATTTAATGAA (2) CAGGTTTGGG (3) GAAAGGGCGG GAGGAGGAGG (2) GCGAGTACCC TAATATTGAA (3) TAATCAGAAA (2) 63.3 0.0633 3T3 fibroblasts CAGGTTTGGG (3) GAGGAGGAGG (2) 24.5 0.0245 E15 cortex ATCAGTGTGC CAGGTTTGGG (3) GAAAGGGCGG GAGGAGGAGG (2) TAATCAGAAA (2) 39.4 0.0394 P1 cortex CAGGTTTGGG (3) GAGGAGGAGG (2) TAATATTGAA (3) TAATCAGAAA (2) 18 0.018 Hypothalamus ACTTTATTTA (2) ATCAGTGTGA ATCAGTGTGC ATTTAATGAA (2) GAAAGGGCGG GAGGAGGAGG (2) TAATATTGAA (3) 21.6 0.0216 E12.5 retina ACTTTATTTT (3) ATCAGTGAAA ATCAGTGTGC CAGGTTTGGG (3) GAGGAGGAGG (2) 60.1 0.0601 E14.5 retina ACTTTATTTA (2) ATCAGTGTGA ATCAGTGTGC ATTTAATGAA (2) CAGGTTTGGG (3) GAAAGGGCGG GCGAGTACCC TAATATTGAA (3) TGTACTCATT 65.5 0.0655 E16.5 retina ACTTTATTTA (2) ATCAGTGAAA ATCAGTGTGA ATCAGTGTGC ATTTAATGAA (2) CAGGTTTGGG (3) GAAAGGGCGG GCGAGTACCC GGCACAACTT TAATATTGAA (3) TGTACTCATT 68.7 0.0687 E18.5 retina ACTTTATTTA (2) ATCAGTGAAA ATCAGTGTGA ATCAGTGTGC CAGGTTTGGG (3) TAATATTGAA (3) TAATCAGAAA (2) 74.5 0.0745 P0.5 retina ACTTTATTTT (3) ATCAGTGAAA ATCAGTGTGA ATCAGTGTGC ATTTAATGAA (2) CAGGTTTGGG (3) GAAAGGGCGG GGCACAACTT TAATATTGAA (3) 64.9 0.0649 P2.5 retina ATCAGTGTGA ATCAGTGTGC CAGGTTTGGG (3) GAGGAGGAGG (2) TAATCAGAAA (2) 35.3 0.0353 P4.5 retina ATCAGTGTGA ATCAGTGTGC CAGGTTTGGG (3) GAGGAGGAGG (2) TAATATTGAA (3) TAATCAGAAA (2) TGTACTCATT 35.7 0.0357 P6.5 retina ACTTTATTTA (2) ATCAGTGAAA ATCAGTGTGA ATCAGTGTGC CAGGTTTGGG (3) GAAAGGGCGG 16.7 0.0167 P10.5 crx- retina ACTTTATTTA (2) ACTTTATTTT (3) ATCAGTGTGC ATTTAATGAA (2) CAGGTTTGGG (3) GAGGAGGAGG (2) TAATATTGAA (3) TAATCAGAAA (2) 22.5 0.0225 P10.5 crx+ retina ATCAGTGAAA ATCAGTGTGA ATCAGTGTGC CAGGTTTGGG (3) GAAAGGGCGG GGCACAACTT TAATATTGAA (3) TAATCAGAAA (2) 40.2 0.0402 Adult retinal ATCAGTGTGC CAGGTTTGGG (3) GAGGAGGAGG (2) GGCACAACTT 14.9 0.0149 ONL ACTTTATTTT (3) GAGGAGGAGG (2) TAATATTGAA (3) 5.7 0.0057