| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AACAAGAGTC AACTGTCTCT (3)
| 6.5 | 0.0065 |
| Cb medulloblastoma | AACTGTCTCT (3)
| 2.3 | 0.0023 |
| P8 GC+1d culture | AAAGAGAAAA (3) AACAAGAGTC AACTGTCTCT (3) GCCTTGTTGC
| 17.1 | 0.0171 |
| P8 GC+SHH+1d culture | AACAAGAGTC AACTGTCTCT (3) GCCCTGTTGC (2)
| 5.9 | 0.0059 |
| 3T3 fibroblasts | AACAAGAGTC GTCATAGCTG (2)
| 14 | 0.014 |
| E15 cortex | AACAAGAGTC GTCATAGCTG (2)
| 9.8 | 0.0098 |
| P1 cortex | AACAAGAGTC
| 13.6 | 0.0136 |
| Hypothalamus | AACAAGAGTC AACTGTCTCT (3)
| 3.6 | 0.0036 |
| E12.5 retina | AACAAGAGTC
| 1.9 | 0.0019 |
| E14.5 retina | AAAAGTGTGT (2) AACAAGAGTC
| 3.6 | 0.0036 |
| E16.5 retina | AACTGTCTCT (3)
| 3.6 | 0.0036 |
| E18.5 retina | AAAAGTGTGT (2) AAAGAGAAAA (3) AACAAGAGTC
| 5.4 | 0.0054 |
| P0.5 retina | AACAAGAGTC AACTGTCTCT (3) GCCCTGTTGC (2) GTCATAGCTG (2)
| 11.8 | 0.0118 |
| P2.5 retina | AAAAGTGTGT (2) AACAAGAGTC AACTGTCTCT (3) GTCATAGCTG (2)
| 8.9 | 0.0089 |
| P4.5 retina | AAAAGTGTGT (2) GTCATAGCTG (2)
| 4 | 0.004 |
| P6.5 retina | AAAAGTGTGT (2) AACTGTCTCT (3) GCCTTGTTGC GTCATAGCTG (2)
| 10 | 0.01 |
| P10.5 crx- retina | AAAAGTGTGT (2) AACAAGAGTC GCCTTGTTGC
| 9.4 | 0.0094 |
| P10.5 crx+ retina | AAAGAGAAAA (3) AACAAGAGTC AACTGTCTCT (3) GCCTTGTTGC
| 7.6 | 0.0076 |
| Adult retinal | AAAAGTGTGT (2) AAAGAGAAAA (3) AACAAGAGTC GTCATAGCTG (2)
| 9.4 | 0.0094 |
| ONL | GTCATAGCTG (2)
| 5.7 | 0.0057 |