Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.280103	Atp1a1	ATPase, Na+/K+ transporting, alpha 1 polypeptide	3	3 48.4 cM	11928
Gene Ontology	ATP binding | ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | catalytic activity | cation transport | cation-transporting ATPase activity | hydrolase activity | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | integral to membrane | magnesium ion binding | membrane | metabolism | monovalent inorganic cation transport | monovalent inorganic cation transporter activity | plasma membrane | potassium ion transport | sodium ion transport | sodium/potassium-exchanging ATPase activity
Human Homolog	ATP1A1[ATPase, Na+/K+ transporting, alpha 1 polypeptide]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 215 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAGCAGAAAT GCCGCCCTCC GCCTATGGAC GCTATGGAGA (2) GGGAAGGGGG (2) GGGGCAGCCC (2) GTGAAAAAAA (2) GTGACAAAAA (3) GTGGTTCTGT (2) GTTCCTGCCA (2) TAGCTGTAAC TGGGAGCAAC (3) TGTGTGTATG (3) 37.4 0.0374 Cb medulloblastoma GCCGCCCTCC GCCTATGGAC GGGAAGGGGG (2) GGTGACAAAA GTCAGAGACC (2) GTGAAAAAAA (2) GTGAAAACAA (2) GTGACAAAAA (3) GTGGTTCTGT (2) TAGCTGTAAC 143.2 0.1432 P8 GC+1d culture ACTCTCCAGT AGGTGACTTG (2) ATTTCTGCAT CTTTGGTGCT GAGCAGAAAT GCCGCCCTCC GCCTATGGAC GCGAGGACAG (3) GCTATGGAGA (2) GGGAAGGGGG (2) GGGGCAGCCC (2) GGGGTTCTGT GTCAGAGACC (2) GTGAAAAAAA (2) GTGACAAAAC GTTCCTGCCA (2) TAGCTGTAAC TGTGTGTATG (3) 92.2 0.0922 P8 GC+SHH+1d culture CTTTGGTGCT GAGCAGAAAT GCCGCCCTCC GCTATGGAGA (2) GGGAAGGGGG (2) GGGGCAGCCC (2) GTGAAAAAAA (2) GTGAAAACAA (2) GTGACAAAAA (3) TAGCTGTAAC 70.1 0.0701 3T3 fibroblasts GCCGCCCTCC GGGGCAGCCC (2) TAGCTGTAAC TGGGAGCAAC (3) 17.5 0.0175 E15 cortex ACTCTCCAGT GAAGCTGAAC GCGAGGAAGA (2) GCTATGGAGA (2) GGGAAGGGGG (2) GGGGCAGCCC (2) GTGACAAAAC TTTTGGTGGT 73.9 0.0739 P1 cortex GAAGCTGAAC GCGAGGAAGA (2) GCGAGGACAG (3) GGGAAGGGGG (2) GGGGCAGCCC (2) 31.7 0.0317 Hypothalamus ATTTCTGCAT GCCGCCCTCC GCCTTCTTCT (2) GCGAGGAAGA (2) GCTATGGAGA (2) GGGAAGGGGG (2) GGGGCAGCCC (2) GTGAAAAAAA (2) GTGGTTCTGT (2) TAGCTGTAAC TGTGTGTATG (3) 70.5 0.0705 E12.5 retina ACTCTCCAGT AGGTGACTTG (2) ATTTCTGCAT GCGAGGACAG (3) GCTATGGAGA (2) GGGAAGGGGG (2) GGGAGGGGAA GGTGACAAAA GTGAAAAAAA (2) GTGAAAACAA (2) GTGACAAAAA (3) GTGACAAAAC TAGCTGTAAC TTTTGGTGGT 58.4 0.0584 E14.5 retina GAAGCTGAAC GAGCAGAAAT GCAGGGGGGG GCCTTCTTCT (2) GCTATGGAGA (2) GGGAAGGGGG (2) GGGGCAGCCC (2) GTGAAAAAAA (2) GTGAAAACAA (2) GTGACAAAAA (3) GTTACAGGAG (2) GTTCCTGCCA (2) TAGCTGTAAC 61.7 0.0617 E16.5 retina AGGTGACTTG (2) GAAGCTGAAC GCCGCCCTCC GCCTTCTTCT (2) GCGAGGACAG (3) GCTATGGAGA (2) GGGAAGGGGG (2) GGGAGGGGAA GGGGCAGCCC (2) GTGAAAAAAA (2) GTGAAAACAA (2) GTTACAGGAG (2) TGTGTGTATG (3) 36 0.036 E18.5 retina GCCGCCCTCC GCGACAAAAA GCGAGGACAG (3) GCTATGGAGA (2) GGGGCAGCCC (2) GTCAGAGACC (2) GTGAAAAAAA (2) GTGAAAACAA (2) TGTGTGTATG (3) 61.7 0.0617 P0.5 retina AGGTGACTTG (2) ATTTCTGCAT GAGCAGAAAT GCCGCCCTCC GCGAGGACAG (3) GCTATGGAGA (2) GGGAAGGGGG (2) GGGGCAGCCC (2) GTCAGAGACC (2) GTGAAAAAAA (2) TAGCTGTAAC 53.2 0.0532 P2.5 retina ATTTCTGCAT GAAGCTGAAC GCAGGGGGGG GCCGCCCTCC GCGACAAAAA GCGAGGACAG (3) GCTATGGAGA (2) GGGAAGGGGG (2) GGGAGGGGAA GGGGCAGCCC (2) GGGGTTCTGT GTCAGAGACC (2) GTGAAAAAAA (2) GTGAAAACAA (2) GTGACAAAAA (3) TAGCTGTAAC 70.8 0.0708 P4.5 retina ATTTCTGCAT GCCGCCCTCC GCGAGGACAG (3) GCTATGGAGA (2) GGGAAGGGGG (2) GGGGCAGCCC (2) GTCAGAGACC (2) GTGAAAAAAA (2) GTGAAAACAA (2) GTGACAAAAA (3) TAGCTGTAAC 97 0.097 P6.5 retina GCCGCCCTCC GCGAGGACAG (3) GCTATGGAGA (2) GGGAAGGGGG (2) GGGGCAGCCC (2) GTGAAAAAAA (2) GTGAAAACAA (2) TAGCTGTAAC 60.1 0.0601 P10.5 crx- retina AGGTGACTTG (2) ATTTCTGCAT GAAGCTGAAC GCGAGGACAG (3) GCTATGGAGA (2) GGGAAGGGGG (2) GGGGCAGCCC (2) GGGGTTCTGT GTGAAAAAAA (2) TAGCTGTAAC TGATGGGTAC (3) 57.8 0.0578 P10.5 crx+ retina AGGTGACTTG (2) ATTTCTGCAT GCCGCCCTCC GCTATGGAGA (2) GGGAAGGGGG (2) GGGGCAGCCC (2) GTCAGAGACC (2) GTGAAAAAAA (2) GTGAAAACAA (2) GTGACAAAAA (3) TAGCTGTAAC 51.8 0.0518 Adult retinal ATTTCTGCAT CTTTGGTGCT GCCGCCCTCC GCTATGGAGA (2) GGGAAGGGGG (2) GGGAGGGGAA GGGGCAGCCC (2) GGTGACAAAA GTCAGAGACC (2) GTGAAAAAAA (2) TAGCTGTAAC 48.5 0.0485 ONL AGGTGACTTG (2) GAAGCTGAAC GCCGCCCTCC GGGAAGGGGG (2) GTGAAAAAAA (2) TAGCTGTAAC TGGGAGCAAC (3) TGTGTGTATG (3) 42 0.042