| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAAAAAAAA (2) CTCCCTCTGT (2) TTTTTGTAAA (2)
| 208.8 | 0.2088 |
| Cb medulloblastoma | AAAAAAAAAA (2)
| 797.8 | 0.7978 |
| P8 GC+1d culture | AAAAAAAAAA (2) TTTTTGTAAA (2)
| 210 | 0.21 |
| P8 GC+SHH+1d culture | AAAAAAAAAA (2) TGTCTGAAGA TGTGCGTGAG
| 281.1 | 0.2811 |
| 3T3 fibroblasts | AAAAAAAAAA (2)
| 28 | 0.028 |
| E15 cortex | AAAAAAAAAA (2)
| 212.8 | 0.2128 |
| P1 cortex | AAAAAAAAAA (2) TTTTTGTAAA (2)
| 249.9 | 0.2499 |
| Hypothalamus | AAAAAAAAAA (2) GGAACCAACA TTTTTGTAAA (2)
| 130.4 | 0.1304 |
| E12.5 retina | AAAAAAAAAA (2) TGTCTGAAGA TTTTTGTAAA (2)
| 152.1 | 0.1521 |
| E14.5 retina | AAAAAAAAAA (2) TTTTTGTAAA (2)
| 102 | 0.102 |
| E16.5 retina | AAAAAAAAAA (2) GGAACCAACA TGTGCGTGAG TTTTTGTAAA (2)
| 48.9 | 0.0489 |
| E18.5 retina | AAAAAAAAAA (2) TGTGCGTGAG TTTTTGTAAA (2)
| 380.1 | 0.3801 |
| P0.5 retina | AAAAAAAAAA (2) CTCCCTCTGT (2) GGAACCAACA TTTTTGTAAA (2)
| 125.7 | 0.1257 |
| P2.5 retina | AAAAAAAAAA (2) GGAACCAACA TGTCTGAAGA TTTTTGTAAA (2)
| 344.9 | 0.3449 |
| P4.5 retina | AAAAAAAAAA (2) CTGATGCACA (2) GGAACCAACA TTTTTGTAAA (2)
| 299.2 | 0.2992 |
| P6.5 retina | AAAAAAAAAA (2) CTCCCTCTGT (2)
| 270.1 | 0.2701 |
| P10.5 crx- retina | AAAAAAAAAA (2) CTGATGCACA (2) GGAACCAACA TTTTTGTAAA (2)
| 59.5 | 0.0595 |
| P10.5 crx+ retina | AAAAAAAAAA (2) TGTCTGAAGA TTTTTGTAAA (2)
| 101.8 | 0.1018 |
| Adult retinal | AAAAAAAAAA (2) TGTCTGAAGA TGTGCGTGAG
| 61.2 | 0.0612 |
| ONL | AAAAAAAAAA (2) TGTCTGAAGA TTTTTGTAAA (2)
| 109.1 | 0.1091 |