Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.283339	Prpf39	PRP39 pre-mRNA processing factor 39 homolog (yeast)	12		328110
Human Homolog	PRPF39[PRP39 pre-mRNA processing factor 39 homolog (yeast)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 99 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACAACATTAA (2) ACACTTTTTG (2) CAAAAAAAAA (2) CAGCAAAAAA (2) CTCTGCCTTT GTGACATTTA 60.2 0.0602 Cb medulloblastoma ACACTTTTTG (2) CAAAAAAAAA (2) CAGCAAAAAA (2) CCTTTCTGCG (3) 106.3 0.1063 P8 GC+1d culture ACACTTTTTG (2) AGCTGCAAAA CAAAAAAAAA (2) CCTTTCTGCG (3) 47.9 0.0479 P8 GC+SHH+1d culture ACACTTTTAT (3) ACACTTTTTG (2) AGCTGCAAAA CAAAAAAAAA (2) CAGCAAAAAA (2) TGAAATCAAA 69.2 0.0692 E15 cortex ACACTTTTTG (2) CAAAAAAAAA (2) 39.5 0.0395 P1 cortex ACACTTTTTG (2) CAAAAAAAAA (2) 31.8 0.0318 Hypothalamus ACACTTTTTG (2) AGCTGCAAAA CAAAAAAAAA (2) CAGCAAAAAA (2) CCTTTCTGCG (3) GGGCTGGGAT TGAAATCAAA 56 0.056 E12.5 retina ACAACATTAA (2) ACACTTTTAT (3) ACACTTTTTG (2) CAAAAAAAAA (2) CAGCAAAAAA (2) CCTTTCTGCG (3) GGGCTGGGAT TAAAACTTAT 43.4 0.0434 E14.5 retina ACACTTTTAT (3) AGCTGCAAAA CAAAAAAAAA (2) CAGCAAAAAA (2) CCTTTCTGCG (3) CTCTGCCTTT TACAAAATAA (2) 27.2 0.0272 E16.5 retina ACACTTTTAT (3) ACACTTTTTG (2) AGCTGCAAAA CAAAAAAAAA (2) CCTTTCTGCG (3) CTCTGCCTTT GTGACATTTA 23.5 0.0235 E18.5 retina ACACTTTTTG (2) AGCTGCAAAA CAAAAAAAAA (2) CAGCAAAAAA (2) CCTTTCTGCG (3) TAAAACTTAT TGAAATCAAA 61.7 0.0617 P0.5 retina ACACTTTTTG (2) AGCTGCAAAA CAAAAAAAAA (2) CCTTTCTGCG (3) TAAAACTTAT 147.3 0.1473 P2.5 retina ACACTTTTTG (2) CAAAAAAAAA (2) CAGCAAAAAA (2) CCTTTCTGCG (3) TAAAACTTAT TACAAAATAA (2) 75.6 0.0756 P4.5 retina ACACTTTTTG (2) AGCTGCAAAA CAAAAAAAAA (2) TACAAAATAA (2) 51.5 0.0515 P6.5 retina AGCTGCAAAA CAAAAAAAAA (2) CAGCAAAAAA (2) CCTTTCTGCG (3) 41.7 0.0417 P10.5 crx- retina ACAACATTAA (2) ACACTTTTTG (2) AGCTGCAAAA CAAAAAAAAA (2) CAGCAAAAAA (2) CCTTTCTGCG (3) GTGACATTTA 35.4 0.0354 P10.5 crx+ retina ACACTTTTTG (2) AGCTGCAAAA CAAAAAAAAA (2) CAGCAAAAAA (2) CCTTTCTGCG (3) GGGCTGGGAT GTGACATTTA 65.3 0.0653 Adult retinal ACACTTTTAT (3) AGCTGCAAAA CAAAAAAAAA (2) CCTTTCTGCG (3) 35.3 0.0353 ONL AGCTGCAAAA CAAAAAAAAA (2) 22.9 0.0229