Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.288602	D730048M19Rik	RIKEN cDNA D730048M19 gene	6		77991
Mm.288602	Jarid1a	jumonji, AT rich interactive domain 1A (Rbp2 like)	6	6 54.0 cM	214899
Mm.288602	D230014I24Rik	RIKEN cDNA D230014I24 gene	6		319391
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 88 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATGGATGAAA (3) GTAGCTCACA (3) TCTTCTCTTA TGGCATACAG (3) TGTAGAAAAA 22.7 0.0227 Cb medulloblastoma AATATTTCAG ATGGATGAAA (3) CTTTAGAAAA GTAGCTCACA (3) TGGCATACAG (3) TGTAGAAAAA TTTGGCAAAA (2) 34.6 0.0346 P8 GC+1d culture AGGATACTGA (3) ATGGATGAAA (3) CTTTAGAAAA GTAGCTCACA (3) TCTTCTCTTA TGGCATACAG (3) TGTAGAAAAA TTTGGCAAAA (2) 37.4 0.0374 P8 GC+SHH+1d culture AATATTTCAG AGGATACTGA (3) CATCACCGAG (3) GTAGCTCACA (3) TCTTCTCTTA TGGCATACAG (3) TGTAGAAAAA TTTGGCAAAA (2) 27 0.027 3T3 fibroblasts CATCACCGAG (3) GTAGCTCACA (3) 17.5 0.0175 E15 cortex ATGGATGAAA (3) GAGGATGATA (3) GTAGCTCACA (3) 39.5 0.0395 P1 cortex GTAGCTCACA (3) TCTTCTCTTA TGTAGAAAAA TTTGGCAAAA (2) 36.2 0.0362 Hypothalamus AGGATACTGA (3) GTAGCTCACA (3) 30.8 0.0308 E12.5 retina AGGATACTGA (3) CATCACCGAG (3) GAGGATGATA (3) GTAGCTCACA (3) TCTTCTCTTA 37.6 0.0376 E14.5 retina GTAGCTCACA (3) TGGCATACAG (3) TGTAGAAAAA 34.6 0.0346 E16.5 retina AGGATACTGA (3) GTAGCTCACA (3) 43.5 0.0435 E18.5 retina AATATTTCAG GAGGATGATA (3) GGGGGAAGGG GTAGCTCACA (3) 21.8 0.0218 P0.5 retina CATCACCGAG (3) GAGGATGATA (3) GTAGCTCACA (3) TCTTCTCTTA 41.3 0.0413 P2.5 retina AGGATACTGA (3) CATCACCGAG (3) GTAGCTCACA (3) 28.2 0.0282 P4.5 retina GTAGCTCACA (3) TCTTCTCTTA TGGCATACAG (3) TGTAGAAAAA 33.8 0.0338 P6.5 retina CATCACCGAG (3) GTAGCTCACA (3) TCTTCTCTTA TGGCATACAG (3) 25 0.025 P10.5 crx- retina AATATTTCAG ATGGATGAAA (3) CTTTAGAAAA GAGGATGATA (3) GGGGGAAGGG GTAGCTCACA (3) TCTTCTCTTA TGGCATACAG (3) 30 0.03 P10.5 crx+ retina AGGATACTGA (3) CATCACCGAG (3) CTTTAGAAAA GGGGGAAGGG GTAGCTCACA (3) TGGCATACAG (3) 42.1 0.0421 Adult retinal GGGGGAAGGG GTAGCTCACA (3) TCTTCTCTTA TGGCATACAG (3) 29.8 0.0298 ONL CTTTAGAAAA GTAGCTCACA (3) 26.8 0.0268