Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.288741	Scap	SREBP cleavage activating protein	9	9 58.0 cM	235623
Gene Ontology	cholesterol binding | cholesterol metabolism | endoplasmic reticulum membrane | endoplasmic reticulum membrane | protein binding | protein binding | regulation of fatty acid metabolism
Human Homolog	SCAP[SREBP CLEAVAGE-ACTIVATING PROTEIN]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 68 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCGGCCCTGG GCTCACTTTC GGCTGCTCTG (2) GGGGAGGCCA GTACTGGCCA (2) 30.9 0.0309 Cb medulloblastoma GCGGCCCTGG GGCTGCTCTG (2) GTACTGGCCA (2) TGCTGAGAGA (2) 11.5 0.0115 P8 GC+1d culture CCTCTTGTGT GAGCTTAGCA GGCTGAACAA (2) GGCTGCTCTG (2) 18.2 0.0182 P8 GC+SHH+1d culture GAGCTTAGCA GGCTGAACAA (2) GGCTGCTCTG (2) GGGGAGGCCA GTACTGGCCA (2) 24.6 0.0246 3T3 fibroblasts GGCTGCTCTG (2) GTACTGGCCA (2) 56 0.056 E15 cortex GGCTGCTCTG (2) GTACTGGCCA (2) 54.4 0.0544 Hypothalamus GGCTGCTCTG (2) GTACTGGCCA (2) 10.8 0.0108 E12.5 retina GCTCACTTTC GGCTGCTCTG (2) GGTCACTTTC 33.8 0.0338 E14.5 retina GGCTGCTCTG (2) GGTCACTTTC 52.8 0.0528 E16.5 retina CCTCTTGTGT GGCTGAACAA (2) GGCTGCTCTG (2) 45.3 0.0453 E18.5 retina GAGCTTAGCA GGCTGCTCTG (2) GGGGAGGCCA GGTCACTTTC TCTGCAACTT 30.8 0.0308 P0.5 retina GGCTGCTCTG (2) GTACTGGCCA (2) TGCTGAGAGA (2) 31.5 0.0315 P2.5 retina GGCTGCTCTG (2) GGTCACTTTC 24.6 0.0246 P4.5 retina GGCTGCTCTG (2) GGTCACTTTC GTACTGGCCA (2) 29.8 0.0298 P6.5 retina GGCTGCTCTG (2) GTACTGGCCA (2) TGCTGAGAGA (2) 40 0.04 P10.5 crx- retina GAGCTTAGCA GGCTGCTCTG (2) GGGGAGGCCA GTACTGGCCA (2) TCTGCAACTT 20.5 0.0205 P10.5 crx+ retina GAGCTTAGCA GCGGCCCTGG GGCTGCTCTG (2) GGTCACTTTC GTACTGGCCA (2) TCTGCAACTT 34.5 0.0345 Adult retinal GAGCTTAGCA GGCTGCTCTG (2) GTACTGGCCA (2) TCTGCAACTT 24.2 0.0242 ONL ACTTCATCAG (2) GGCTGCTCTG (2) GGTCACTTTC GTACTGGCCA (2) TCTGCAACTT 17.2 0.0172