| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | ATGCTCTATT (4) CAAAAAAAAA (2) CACAAAATAA (4) CCCAAAATAA (4) GATTTTTCTT (3) GTGGCGCACG TGGCTTTTAT (6)
| 75 | 0.075 |
| Cb medulloblastoma | CAAAAAAAAA (2) CAACAAAAGT (3) CACAAAATAA (4) GTGGCGCACG
| 108.6 | 0.1086 |
| P8 GC+1d culture | ATGCTCTATT (4) CAAAAAAAAA (2) CACAAAATAA (4) GTGGCGCACG TGGCTTTTAT (6)
| 55.9 | 0.0559 |
| P8 GC+SHH+1d culture | ATGCTCTATT (4) CAAAAAAAAA (2) CACAAAATAA (4) CCCAAAATAA (4) GATTTTTCTT (3) GTGGCGCACG TGGCTTTTAT (6)
| 76.1 | 0.0761 |
| 3T3 fibroblasts | ATGCTCTATT (4) GTGGCGCACG
| 66.6 | 0.0666 |
| E15 cortex | CAAAAAAAAA (2) GAAGCATTTA (3) GTGGCGCACG
| 153.3 | 0.1533 |
| P1 cortex | CAAAAAAAAA (2) GTGGCGCACG
| 40.9 | 0.0409 |
| Hypothalamus | CAAAAAAAAA (2) CACAAAATAA (4) GTGGCGCACG
| 45.2 | 0.0452 |
| E12.5 retina | CAAAAAAAAA (2) CACAAAATAA (4) GTGGCGCACG
| 35.7 | 0.0357 |
| E14.5 retina | CAAAAAAAAA (2) CACAAAATAA (4) GTGGCGCACG
| 41.9 | 0.0419 |
| E16.5 retina | ATGCTCTATT (4) CAAAAAAAAA (2) GATTTTTCTT (3) GTGGCGCACG
| 38.1 | 0.0381 |
| E18.5 retina | ATGCTCTATT (4) CAAAAAAAAA (2) CAACAAAAGT (3) CACAAAATAA (4) GTGGCGCACG TGGCTTTTAT (6)
| 59.9 | 0.0599 |
| P0.5 retina | ATGCTCTATT (4) CAAAAAAAAA (2) GATTTTTCTT (3) GTGGCGCACG
| 168.8 | 0.1688 |
| P2.5 retina | ATGCTCTATT (4) CAAAAAAAAA (2) CACAAAATAA (4) CCCAAAATAA (4) GAAGCATTTA (3) GTGGCGCACG
| 81 | 0.081 |
| P4.5 retina | ATGCTCTATT (4) CAAAAAAAAA (2) CAACAAAAGT (3) CACAAAATAA (4) GATTTTTCTT (3) GTGGCGCACG
| 71.4 | 0.0714 |
| P6.5 retina | CAAAAAAAAA (2) CACAAAATAA (4) CCTTTCTGGT GAAGCATTTA (3) GTGGCGCACG
| 81.7 | 0.0817 |
| P10.5 crx- retina | ATGGGTGTCC (2) CAAAAAAAAA (2) CACAAAATAA (4) GTGGCGCACG
| 35.3 | 0.0353 |
| P10.5 crx+ retina | ATGCTCTATT (4) ATGGGTGTCC (2) CAAAAAAAAA (2) CACAAAATAA (4) GTGGCGCACG
| 76.9 | 0.0769 |
| Adult retinal | CAAAAAAAAA (2) CACAAAATAA (4) GTGGCGCACG
| 44.5 | 0.0445 |
| ONL | CAAAAAAAAA (2) CACAAAATAA (4) CCTTTCTGGT GATTTTTCTT (3) GTGGCGCACG
| 51.6 | 0.0516 |