Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.291442	Sparc	secreted acidic cysteine rich glycoprotein	11	11 B1 (11 29.9 cM)	20692
Gene Ontology	basement membrane | calcium ion binding | extracellular matrix | extracellular space
Human Homolog	SPARC[secreted protein, acidic, cysteine-rich (osteonectin)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 7 In Situ Hybridization Images

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SAGE Tags

Total 377 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAATTGGAAG CAAAATTTCA (2) CAAACTCTCA CCTCGGGGGC CCTGACTGGC CGTGACTGGC (2) CGTGACTGGG GAAAACTTAA (2) GAACATTGCA (2) GAAGTTTGGC GACCATTGCA GCAGAAACAA GGTGGGCCAG GGTGTGCCAG TACCTATTGT (2) TACTACTGTA (3) TCAGTGAAAA TGAAAGAGCT (3) TGGCCCAAAA (2) TGGGGTTCTG TGTGTGTGCA (2) TGTGTGTGCC TTTGGCTGTT 92.8 0.0928 Cb medulloblastoma AAGAAAAGTG (2) CAAACTCTCA CAAACTTTCA CTAGAAACTT GAAAACTTAA (2) GAACATTGCA (2) GACCATTGCA GCAAGGTGTG GCTCTCAAAA GCTGCCCTGG (2) GGGATGAGGG GGGGATGAGG (6) GGTGGGGCAG (3) TACCTATTGT (2) TACTACTGTA (3) TGTGTGTGCA (2) TGTGTGTGCC TGTGTTGTGC TTCCCCCTCA 189.2 0.1892 P8 GC+1d culture AAGAAAAGTG (2) CAAAATTTCA (2) CAAACTCTCA CGTGACTGGG CTAGAAACTT GAACATTGCA (2) GCCTGGAGAA GCGCAGCTCA GCTGCCCTGG (2) GGAAAAATTG GGGTGGGGAA (2) GGTGGGCCAG GGTGTGCCAG GTCCTGGGGG (3) TACCTATTGT (2) TCAGTGAAAA TGGCCCAAAA (2) TGGGGTTCTG TGTGTGTGCA (2) TGTGTGTGCC TGTGTTGTGC TTCCCCCTCA 110.4 0.1104 P8 GC+SHH+1d culture CAAACTCTCA CCTGACTGGC CGTGACTGGG CTAGAAACTT GAAAACTTAA (2) GAACATTGCA (2) GCCTCAGAGT GCTCTCAAAA GCTGCCCTGG (2) GGAAAAATTG GGTGGGCCAG GGTGTGCCAG TACCTATTGT (2) TACTACTGTA (3) TCAGTGAAAA TGGCCCAAAA (2) TGGGGTTCTG TGTGTGTGCA (2) TGTGTGTGCC TGTGTTGTGC TTTATAAAAA 85.7 0.0857 3T3 fibroblasts CAAACTCTCA GAACATTGCA (2) GCCTGGAGAA GCTGCCCTGG (2) GGTGGGCCAG GGTGTGCCAG GTCCTGGGGG (3) TGCCAGTGAC TGGCCCAAAA (2) TGGGGTTCTG TGTGTGTGCC TGTGTTGTGC 406.5 0.4065 E15 cortex CAAACTCTCA CCTCGGGGGC CCTGACTGGC GACCATTGCA GCCTGGAGAA GCGCAGCTCA GCTGCCCTGG (2) GGAAAAATTG GTCCTGGGGG (3) TGCCAGTGAC 88.7 0.0887 P1 cortex AGAATGGAGA (3) CAAACTCTCA CCTGACTGGC GAACATTGCA (2) GCGCAGCTCA GGTGTGCCAG TACCTATTGT (2) TACTACTGTA (3) TGCCAGTGAC TGGGGTTCTG TGTGTGTGCC TGTGTTGTGC 104.3 0.1043 Hypothalamus AAATGCTTGG AAGAAAAGTG (2) AGAATGGAGA (3) CAAAATTTCA (2) CAAACTCTCA CGTGACTGGC (2) CTAGAAACTT GAAAACTTAA (2) GAAACTTTGA GAACATTGCA (2) GACCATTGCA GCAAGGTGTG GCAGAAACAA GCCTCAGAGT GCTGCCCTGG (2) GGAAAAATTG GGGATGAAGG GGGATGAGGG GGGGGCCCTG GGTGGGCCAG GGTGGGGCAG (3) TACCTATTGT (2) TACTACTGTA (3) TGGCCCAAAA (2) TGTGTGTGCA (2) TTCCCCCTCA TTTATAAAAA TTTGGCTGTT 367.3 0.3673 E12.5 retina AGAACGAGGA CAAACTCTCA CCTCGGGGGC CCTGACTGGC CGTGACTGGC (2) CGTGACTGGG GAAAACTTAA (2) GAACATTGCA (2) GCAGAAACAA GCTCTCAAAA GGAAAAATTG GGGGATGAGG (6) GGGTGGGGAA (2) GGTGGGCCAG GGTGTGCCAG TGTGTGTGCA (2) 113 0.113 E14.5 retina CAAAATTTCA (2) CAAACTCTCA CCTGACTGGC CGTGACTGGG CTAGAAACTT GAAAACTTAA (2) GAACATTGCA (2) GACCATTGCA GAGAATGAGA GCCTCAGAGT GCCTGGAGAA GCTCTCAAAA GCTGCCCTGG (2) GGAAAAATTG GGGATGAGGG GGTGGGCCAG GTTTCCCCTC (2) TGGGGTTCTG TGTGTGTGCA (2) TGTGTGTGCC 79.9 0.0799 E16.5 retina CAAAATTTCA (2) CAAACTCTCA CCTGACTGGC CGTGACTGGG GAAAACTTAA (2) GAACATTGCA (2) GACCATTGCA GCTCTCAAAA GCTGCCCTGG (2) GGAAAAATTG GGGATGAGGG GGGTGGGGAA (2) GGTGTGCCAG TGAAAGAGCT (3) TGGGGTTCTG TGTGTGTGCA (2) TGTGTTGTGC TTCCCCCTCA 77.7 0.0777 E18.5 retina AAGAAAAGTG (2) CAAAATTTCA (2) CAAACTCTCA CCTGACTGGC CGTGACTGGG CTGGAGCTGC (3) GAAAACTTAA (2) GAAGTTTGGC GCCTCAGAGT GCGCAGCTCA GGGATGAGGG GGTGTGCCAG GTCCTGGGGG (3) GTTTCCCCTC (2) TACCTATTGT (2) TACTACTGTA (3) TCAGTGAAAA TGAAAGAGCT (3) TGGGGTTCTG TGTGTGTGGC TGTGTTGTGC 79.8 0.0798 P0.5 retina AAGAAAAGTG (2) CAAACTCTCA CGTGACTGGG GAAAACTTAA (2) GAACAATGAA GAACATTGCA (2) GACCATTGCA GGGGATGAGG (6) GGTGTGCCAG GTCCTGGGGG (3) TACCTATTGT (2) TGGCCCAAAA (2) TGTGTGTGCA (2) TGTGTTGTGC TTTGGCTGTA 55 0.055 P2.5 retina CAAACTCTCA CCTGACTGGC CGTGACTGGG GAAAACTTAA (2) GAACAATGAA GAACATTGCA (2) GACCATTGCA GCCTCAGAGT GCCTGGAGAA GCTGCCCTGG (2) GGAAAAATTG GGTGTGCCAG GTCCTGGGGG (3) TACCTATTGT (2) TACTACTGTA (3) TGGCCCAAAA (2) TGGGGTTCTG TGTGTGTGGC TGTGTTGTGC TTTATAAAAA TTTGGCTGTT 91.8 0.0918 P4.5 retina AGAATGGAGA (3) CAAAATTTCA (2) CAAACTCTCA CGTGACTGGG GAAAACTTAA (2) GAACATTGCA (2) GAAGTTTGGC GACCATTGCA GCCTCAGAGT GGAAAAATTG GGTGGGCCAG TACCTATTGT (2) TACTACTGTA (3) TGGCCCAAAA (2) TGGGGTTCTG TGTGTGTGCA (2) TTTGGCTGTA 101.3 0.1013 P6.5 retina CAAAATTTCA (2) CAAACTCTCA CCTCGGGGGC CTAGAAACTT GAAAACTTAA (2) GAACATTGCA (2) GACCATTGCA GCCTCAGAGT GCCTGGAGAA GGAAAAATTG GGGATGAAGG GGGTGGGGAA (2) GGTGTGCCAG GTCCTGGGGG (3) TACCTATTGT (2) TACTACTGTA (3) TCAGTGAAAA TGAAAGAGCT (3) TGGGGTTCTG TGTGTGTGCA (2) TTTATAAAAA 123.8 0.1238 P10.5 crx- retina AAGAAAAGTG (2) CAAAATTTCA (2) CAAACTCTCA CAAACTTTCA CCTGACTGGC CGTGACTGGC (2) CGTGACTGGG GAACATTGCA (2) GACCATTGCA GAGAATGAGA GCTCTCAAAA GGGATGAAGG GGGGGCCCTG GGGTGGGGAA (2) GGTGTGCCAG TACCTATTGT (2) TGAAAGAGCT (3) TGGGGTTCTG TGTGTGTGCA (2) TGTGTTGTGC TTCCCCCTCA 175 0.175 P10.5 crx+ retina AAGAAAAGTG (2) CAAAATTTCA (2) CAAACTCTCA CAAACTTTCA CCTGACTGGC CGTGACTGGC (2) CTAGAAACTT GAAAACTTAA (2) GAACATTGCA (2) GACCATTGCA GCAGAAACAA GCTCTCAAAA GGGGATGAGG (6) GGGTGGGGAA (2) GGTGTGCCAG GTCCTGGGGG (3) GTTTCCCCTC (2) TACCTATTGT (2) TACTACTGTA (3) TGGCCCAAAA (2) TGGGGTTCTG TGTGTGTGCC TGTGTGTGGC 203.4 0.2034 Adult retinal CAAAATTTCA (2) CAAACTCTCA CCTGACTGGC CGTGACTGGG CTAGAAACTT GAAACTTTGA GAACATTGCA (2) GAAGTTTGGC GACCATTGCA GCTGCCCTGG (2) GGAAAAATTG GGGGGCCCTG GGTGGGGCAG (3) GTTTCCCCTC (2) TACCTATTGT (2) TGAAAGAGCT (3) TGGGGTTCTG TGTGTGTGCA (2) TGTGTGTGCC TGTGTTGTGC 84 0.084 ONL AAATTGGAAG AGAACGAGGA CAAACTCTCA CGTGACTGGG CTGGAGCTGC (3) GAACATTGCA (2) GACCATTGCA GGGGATGAGG (6) GGGTGGGGAA (2) GGTGTGCCAG GTTTCCCCTC (2) TACCTATTGT (2) TGGCCCAAAA (2) TGTGTGTGCA (2) TGTGTGTGCC TTTATAAAAA TTTGGCTGTA 62.8 0.0628