Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.291533	Hps3	Hermansky-Pudlak syndrome 3 homolog (human)	3	3 12.5 cM	12807
Gene Ontology	cytoplasm | organelle organization and biogenesis
Human Homolog	HPS3[Hermansky-Pudlak syndrome 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 69 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACTTGTTTAC CTGAGAGAAA (2) TAAAAAAAAA (3) 52.2 0.0522 Cb medulloblastoma ACCTGTGCTG ACTTGTTTAC ATTTTCAAAA (2) TAAAAAAAAA (3) 115.6 0.1156 P8 GC+1d culture ATTTTCAAAA (2) GGGAACCCCT GTGATGCACA (3) TAAAAAAAAA (3) 70.7 0.0707 P8 GC+SHH+1d culture ATTTTCAAAA (2) CTGAGAGAAA (2) TAAAAAAAAA (3) 103.1 0.1031 3T3 fibroblasts CTGAGAGAAA (2) TAAAAAAAAA (3) 10.5 0.0105 E15 cortex AGAACTTAAA (3) TAAAAAAAAA (3) 14.8 0.0148 P1 cortex GGGAACCCCT TAAAAAAAAA (3) 59.1 0.0591 Hypothalamus ACCTGTGCTG ATTTTCAAAA (2) CAAAACTCTG (4) TAAAAAAAAA (3) 38 0.038 E12.5 retina ACTTGTTTAC GGGAACCCCT TAAAAAAAAA (3) 28.2 0.0282 E14.5 retina ACTTGTTTAC AGAACTTAAA (3) ATTTTCAAAA (2) GGGAACCCCT TAAAAAAAAA (3) 49.1 0.0491 E16.5 retina AGAACTTAAA (3) ATTTTCAAAA (2) GGGAACCCCT TAAAAAAAAA (3) 36.1 0.0361 E18.5 retina ACTTGTTTAC CAAAACTCTG (4) GGGAACCCCT TAAAAAAAAA (3) TTAACAGCCA 118.1 0.1181 P0.5 retina ATTTTCAAAA (2) GGGAACCCCT TAAAAAAAAA (3) 51.1 0.0511 P2.5 retina ATTTTCAAAA (2) CAAAACTCTG (4) GGGAACCCCT GTGATGCACA (3) TAAAAAAAAA (3) 84.6 0.0846 P4.5 retina ATTTTCAAAA (2) GGGAACCCCT TAAAAAAAAA (3) 132.7 0.1327 P6.5 retina ACTTGTTTAC ATTTTCAAAA (2) TAAAAAAAAA (3) 66.8 0.0668 P10.5 crx- retina ACTTGTTTAC TAAAAAAAAA (3) 11.2 0.0112 P10.5 crx+ retina ACTTGTTTAC GGGAACCCCT GTGATGCACA (3) TAAAAAAAAA (3) TTAACAGCCA 34.5 0.0345 Adult retinal ACCTGTGCTG GGGAACCCCT TAAAAAAAAA (3) 22.3 0.0223 ONL ACTTGTTTAC ATTTTCAAAA (2) TAAAAAAAAA (3) TTAACAGCCA 36.3 0.0363