| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AGCAGATGAA (2) ATAATCATCG CTCAGCTCGA TAAAAAAAAA (3) TAAAAAAAGA TTAAAAAAAA (2)
| 66.8 | 0.0668 |
| Cb medulloblastoma | TAAAAAAAAA (3) TATGAAACAT TTAAAAAAAA (2)
| 161.9 | 0.1619 |
| P8 GC+1d culture | TAAAAAAAAA (3) TATGAAACAT TTAAAAAAAA (2) TTGACAGACG
| 98.1 | 0.0981 |
| P8 GC+SHH+1d culture | AGCAGATGAA (2) TAAAAAAAAA (3) TATGAAACAT TTAAAAAAAA (2) TTGACAGACG
| 132.4 | 0.1324 |
| 3T3 fibroblasts | CTCAGCTCGA TAAAAAAAAA (3)
| 10.5 | 0.0105 |
| E15 cortex | TAAAAAAAAA (3) TTAAAAAAAA (2)
| 14.8 | 0.0148 |
| P1 cortex | TAAAAAAAAA (3) TTAAAAAAAA (2)
| 63.6 | 0.0636 |
| Hypothalamus | ATAATCATCG TAAAAAAAAA (3) TGGTTATAAT TTAAAAAAAA (2)
| 57.9 | 0.0579 |
| E12.5 retina | TAAAAAAAAA (3) TTAAAAAAAA (2)
| 35.7 | 0.0357 |
| E14.5 retina | TAAAAAAAAA (3) TATGAAACAT TTAAAAAAAA (2)
| 60.1 | 0.0601 |
| E16.5 retina | AGCAGATGAA (2) ATAATCATCG TAAAAAAAAA (3) TGGTTATAAT TTAAAAAAAA (2)
| 47 | 0.047 |
| E18.5 retina | TAAAAAAAAA (3) TAAAAAAAGA TTAAAAAAAA (2)
| 160 | 0.16 |
| P0.5 retina | CTGGGGAGGG TAAAAAAAAA (3) TAAAACAAAT TTAAAAAAAA (2)
| 59 | 0.059 |
| P2.5 retina | TAAAAAAAAA (3) TATGAAACAT TTAAAAAAAA (2)
| 114.5 | 0.1145 |
| P4.5 retina | TAAAAAAAAA (3) TAAAAAAAGA TAAAACAAAT TATGAAACAT TTAAAAAAAA (2)
| 180.4 | 0.1804 |
| P6.5 retina | TAAAAAAAAA (3) TAAAACAAAT TTAAAAAAAA (2)
| 83.4 | 0.0834 |
| P10.5 crx- retina | ATAATCATCG CTGGGGAGGG TAAAAAAAAA (3) TGGTTATAAT TTAAAAAAAA (2)
| 29.8 | 0.0298 |
| P10.5 crx+ retina | CTGGGGAGGG TAAAAAAAAA (3) TTAAAAAAAA (2)
| 32.7 | 0.0327 |
| Adult retinal | TAAAAAAAAA (3) TGGTTATAAT TTAAAAAAAA (2) TTGACAGACG
| 29.7 | 0.0297 |
| ONL | CTCAGCTCGA TAAAAAAAAA (3) TTAAAAAAAA (2)
| 38.3 | 0.0383 |