| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAAAAAAAA (2) GCCAATGGGC
| 205.5 | 0.2055 |
| Cb medulloblastoma | AAAAAAAAAA (2)
| 797.8 | 0.7978 |
| P8 GC+1d culture | AAAAAAAAAA (2)
| 204.3 | 0.2043 |
| P8 GC+SHH+1d culture | AAAAAAAAAA (2) ATGTGTCTGT (2) TATGGCTCTG (2) TCTGGCTCTG (3)
| 282.3 | 0.2823 |
| 3T3 fibroblasts | AAAAAAAAAA (2) GTCATAGCTG (2) TCTGGCTCTG (3)
| 42 | 0.042 |
| E15 cortex | AAAAAAAAAA (2) GCCAATGGGC GTCATAGCTG (2)
| 222.6 | 0.2226 |
| P1 cortex | AAAAAAAAAA (2) GCCAATGGGC TAATTAAAGT (3)
| 254.4 | 0.2544 |
| Hypothalamus | AAAAAAAAAA (2) GCCAATGGGC TAATTAAAGT (3)
| 126.8 | 0.1268 |
| E12.5 retina | AAAAAAAAAA (2) TAATTAAAGT (3)
| 140.8 | 0.1408 |
| E14.5 retina | AAAAAAAAAA (2) ATGTGTCTGT (2)
| 96.5 | 0.0965 |
| E16.5 retina | AAAAAAAAAA (2) ATGTGTCTGT (2)
| 45.3 | 0.0453 |
| E18.5 retina | AAAAAAAAAA (2) ATGTGTCTGT (2) TATGGCTCTG (2)
| 378.3 | 0.3783 |
| P0.5 retina | AAAAAAAAAA (2) GTCATAGCTG (2) TCTGGCTCTG (3)
| 123.7 | 0.1237 |
| P2.5 retina | AAAAAAAAAA (2) ATGTGTCTGT (2) GTCATAGCTG (2)
| 332.7 | 0.3327 |
| P4.5 retina | AAAAAAAAAA (2) ATGTGTCTGT (2) GTCATAGCTG (2) TAATTAAAGT (3)
| 289.3 | 0.2893 |
| P6.5 retina | AAAAAAAAAA (2) GTCATAGCTG (2) TAATTAAAGT (3)
| 271.8 | 0.2718 |
| P10.5 crx- retina | AAAAAAAAAA (2) ATGTGTCTGT (2)
| 48.3 | 0.0483 |
| P10.5 crx+ retina | AAAAAAAAAA (2) ATGTGTCTGT (2) TAATTAAAGT (3)
| 101.8 | 0.1018 |
| Adult retinal | AAAAAAAAAA (2) GCCAATGGGC GTCATAGCTG (2) TATGGCTCTG (2)
| 63.1 | 0.0631 |
| ONL | AAAAAAAAAA (2) ATGTGTCTGT (2) GTCATAGCTG (2) TAATTAAAGT (3)
| 114.8 | 0.1148 |