Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.301259	Tuba1	tubulin, alpha 1	15	15 F1 (15 60.4 cM)	22142
Gene Ontology	GTP binding | microtubule | microtubule-based movement | microtubule-based process | structural constituent of cytoskeleton | structural molecule activity
Human Homolog	TUBA3[tubulin, alpha 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 461 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACTTTTGGAA (4) ATGTCTCAAA CACGCTCCCG CCCTCACCCA (2) CTGAGCAACA (2) CTTTGGCTGA GAAAAAAAAA (2) GAGGAGGGTG GCATCCAGCC GCGAGGGTCA GCTGCCCTAA (2) GCTGCCCTAC (2) GCTGCCCTAG (2) GCTGCCCTAT GCTGCCTTAG (2) GCTTGCTGCC GGGGGAGGGA (2) GTAGACAATG GTAGGCTTTC GTCACGATGT TCCTCACGGG TGCCCCGGGC TGCTGCCATT (2) TTGGAGCTGG TTGGCCAGGC 923.4 0.9234 Cb medulloblastoma ACTTTTGGAA (4) AGAGGGTGAG ATGTCTCAAA CACGCTCCCG CCCTCACCCA (2) CTTTAAGTTT (2) GAAAAAAAAA (2) GAGGAGGGTG GCATCCAGCC GCGAGGGTCA GCTGCCCTAG (2) GTAGACAATG GTCACGATGT TCCTCACGGG TGCCCCGGGC TTGGAGCTGG 446 0.446 P8 GC+1d culture AAGGCACAAT AGCAGCTTTC AGCAGTTTCT ATGTCTCAAA CACGCTCCCG CCCTCACCCA (2) CTGAGCAACA (2) CTTTGGCTGA GAAAAAAAAA (2) GAAAGAGAAA (3) GAGGAGGGTG GATGTTCTGA GCATCCAGCC GCGAGGGTCA GCTGCCATTG GCTGCCCTAA (2) GCTGCCCTAC (2) GCTGCCCTAG (2) GCTGCCCTAT GCTGTCCTAG (2) GCTTGCTGCC GGACATTTAA GGGATGGGCC GGGGGAGGGA (2) GTAGACAATG GTAGGCTTTC GTCACGATGT GTTGCCCTAG TCCTCACGGG TGCCCCGGGC TGCTGCCATT (2) TTGGAGCTGG TTTGGTGTTT (7) 819.2 0.8192 P8 GC+SHH+1d culture AAGGCACAAT AGCAGTTTCT ATGTCTCAAA CACACAGCTC CACGCTCCCG CCCTCACACA (2) CCCTCACCCA (2) CTGAGCAACA (2) CTTTGGCTGA GAAAAAAAAA (2) GAAAATGGTG GAAAGAGAAA (3) GAGGAGGGTG GATGTTCTGA GCATCCAGCC GCTGCCATTG GCTGCCCTAC (2) GCTGCCCTAG (2) GCTGCCCTAT GCTTGCTGCC GGGGGAGGGA (2) GTAAGAAAAA (2) GTAGACAATG GTAGGCTTTC GTCACGATGT GTGCACACAG TCCTCACGGG TGCCCCGGGC TGCTGCCATT (2) TTGGAGCTGG TTGGCCAGGC 856.3 0.8563 3T3 fibroblasts AAGGCACAAT ATGTCTCAAA CACGCTCCCG CCCTCACACA (2) CTGAGCAACA (2) CTGCTGAGCA GAGGAGGGTG GCTGCCCTAG (2) GGGGGAGGGA (2) GTAGACAATG TCCTCACGGG TGCTGCCATT (2) TTGGAGCTGG 567.8 0.5678 E15 cortex ACTTTTGGAA (4) AGAACTTAAA (3) ATGTCTCAAA CACGCTCCCG CCCTCACCCA (2) CTGAGCAACA (2) GAAAAAAAAA (2) GAGGAGGGTG GCATCCAGCC GCGAGGGTCA GCTGCCATTG GCTGCCCTAA (2) GCTGCCCTAG (2) GCTGCCTAGA GCTGTCCTAG (2) GCTTGCTGCC GGCTGCCCTA TGCCCCGGGC TGCTGCCATT (2) TTGGAGCTGG 2305.3 2.3053 P1 cortex AAGGCACAAT ATGTCTCAAA CACACAGCTC CACGCTCCCG CCCTCACCCA (2) GAAAAAAAAA (2) GATGTTCTGA GCATCCAGCC GCTGCCATTG GCTGCCCTAA (2) GCTGCCCTAC (2) GCTGCCCTAG (2) GCTGCCCTAT GCTGCCTAGA GCTGCCTTAG (2) GCTGTCCTAG (2) GCTTGCTGCC GGCTGCCCTA GTCACGATGT GTTGCCCTAG TGCCCCGGGC TTGGAGCTGG TTTATTGTGT 1522.1 1.5221 Hypothalamus AAGGCACAAT ACTTTTGGAA (4) AGCAGTTTCT AGGAGGTGAG ATGTCTCAAA CACGCTCCCG CCCTCACCCA (2) CTGAGCAACA (2) CTTTAAGTTT (2) CTTTGGCTGA GAAAAAAAAA (2) GAAAGGAGGG GAGGAGGGTG GCGAGGGTCA GCTGCCCTAC (2) GCTGCCCTAG (2) GTAGACAATG GTAGGCTTTC TCCTCACGGG TGCCCCGGGC TTGGAGCTGG 432.6 0.4326 E12.5 retina AAGGCACAAT ACTTTTGGAA (4) AGAGGGTGAG ATGTCTCAAA CACACAGACA (3) CACGCTCCCG CTGAGCAACA (2) CTTTAAGTTT (2) CTTTGGCTGA GAAAAAAAAA (2) GAAAGGAGGG GAGGAGGGTG GCGAGGGTCA GCTGCCATTG GCTGCCCTAA (2) GCTGCCCTAG (2) GCTGTCCTAG (2) GTCACGATGT GTGCACACAG TCCTCACGGG TGCCCCCGGG TGCCCCGGGA (2) TGCTGCCATT (2) TTGGAGCTGG 1102.5 1.1025 E14.5 retina AAGGCACAAT AGAACTTAAA (3) AGCAGTTTCT AGGAGGTGAG ATGAGCAACA ATGTCTCAAA CACACAGCTC CACGCTCCCG CCCTCACCCA (2) CTGAGCAACA (2) CTTTGGCTGA GAAAAAAAAA (2) GAAAATGGTG GAGGAGGGTG GCGAGGGTCA GCTGCCCTAG (2) GGGATGGGCC GGGGGAGGGA (2) GTAGACAATG GTGATGCTTC GTGCACACAG TCCTCACGGG TGCCCCGGGA (2) TGCCCCGGGC TGCTGCCATT (2) TTGGAGCTGG TTGGCCAGGC 955.999999999999 0.955999999999999 E16.5 retina AAGGCACAAT AGAACTTAAA (3) AGAGGGTGAG AGCAGCTTTC AGGAGGTGAG ATGTCTCAAA CACACAGACA (3) CACACAGCTC CACGCTCCCG CCCTCACACA (2) CCCTCACCCA (2) CTGAGCAACA (2) CTTTGGCTGA GAAAAAAAAA (2) GAGGAGGGTG GCATCCAGCC GCGAGGGTCA GCTGCCATTG GCTGCCCTAA (2) GCTGCCCTAC (2) GCTGCCCTAG (2) GCTTGCTGCC GGCTGCCCTA GTAAGAAAAA (2) GTAGACAATG GTAGGCTTTC TCCTCACGGG TGCCCCCGGG TGCCCCGGGC TGCTGCCATT (2) TTGGAGCTGG TTGGCCAGGC 999.3 0.9993 E18.5 retina AAGGCACAAT ATGTCTCAAA CACGCTCCCG CCCTCACCCA (2) CTTTGGCTGA GAAAAAAAAA (2) GAAAATGGTG GAGGAGGGTG GCATCCAGCC GCGAGGGTCA GCTGCCATTG GCTGCCCTAA (2) GCTGCCCTAC (2) GCTGCCCTAG (2) GGGATATTTA GGGATGGGCC GTAGACAATG GTGCACACAG TCCTCACGGG TGCCCCCGGG TGCCCCGGGC TGCTGCCATT (2) TTGGAGCTGG TTGGCCAGGC TTTATTGTGT 1076.4 1.0764 P0.5 retina AGAGGGTGAG AGCAGTTTCT ATGTCTCAAA CACACAGACA (3) CACGCTCCCG CCCTCACCCA (2) CTGAGCAACA (2) CTGCTGAGCA CTTTGGCTGA GAAAAAAAAA (2) GAAAATGGTG GAAAGAGAAA (3) GAGCAGTTTC (2) GAGGAGGGTG GATGGAGATG (2) GCGAGGGTCA GCTGCCCTAA (2) GCTGCCCTAC (2) GCTGCCCTAG (2) GCTGCCCTAT GCTGCCTTAG (2) GCTTGCTGCC GGCTGCCCTA GGGATATTTA GGGATGGGCC GTAGACAATG GTAGGCTTTC GTCACGATGT TCCTCACGGG TGCCCCGGGC TGCTGCCATT (2) TTGGAGCTGG 876 0.876 P2.5 retina AAGGCACAAT ACTTTTGGAA (4) AGCAGTTTCT ATGTCTCAAA CACACAGACA (3) CACGCTCCCG CTGAGCAACA (2) CTTTGGCTGA GAAAAAAAAA (2) GAAAGAGAAA (3) GCATCCAGCC GCTGCCCTAA (2) GCTGCCCTAG (2) GCTGCCTTAG (2) GGACATTTAA GGCTGCCCTA GTAGACAATG GTCACGATGT GTTGCCCTAG TGCTGCCATT (2) TTGGAGCTGG 827.7 0.8277 P4.5 retina ATGTCTCAAA CACACAGCTC CACGCTCCCG CTGAGCAACA (2) GAAAAAAAAA (2) GATGGAGATG (2) GCTGCCCTAA (2) GCTGCCCTAC (2) GCTGCCCTAG (2) GGACATTTAA GGGGGAGGGA (2) GTCACGATGT TCCTCACGGG TGCTGCCATT (2) TTGGAGCTGG 695.7 0.6957 P6.5 retina AAGGCACAAT ATGTCTCAAA CACACAGACA (3) CACGCTCCCG CTGAGCAACA (2) CTTTGGCTGA GAAAAAAAAA (2) GAAAGGAGGG GATGGAGATG (2) GCATCCAGCC GCGAGGGTCA GCTGCCCTAA (2) GCTGCCCTAC (2) GCTGCCCTAG (2) GCTGCCCTAT GCTGCCTAGA GCTTGCTGCC GGGGGAGGGA (2) GTAGACAATG GTCACGATGT GTGCACACAG TCCTCACGGG TGCCCCGGGC TGCTGCCATT (2) TTGGAGCTGG TTTGGTGTTT (7) 500.3 0.5003 P10.5 crx- retina AAGGCACAAT ACTTTTGGAA (4) AGAGGGTGAG AGCAGTTTCT AGGAGGTGAG ATGTCTCAAA CTGAGCAACA (2) CTTTGGCTGA GAAAAAAAAA (2) GAGGAGGGTG GCATCCAGCC GCTGCCCTAA (2) GCTGCCCTAG (2) GCTGCCTTAG (2) GCTTGCTGCC GGCTGCCCTA GTAAGAAAAA (2) GTAGACAATG GTAGGCTTTC TCCTCACGGG TGCCCCCGGG TGCCCCGGGC TTGGCCAGGC TTTGGTGTTT (7) 635.7 0.6357 P10.5 crx+ retina AAGGCACAAT AGAGGGTGAG AGCAGCTTTC AGCAGTTTCT ATGTCTCAAA CACACAGACA (3) CTGCTGAGCA CTTTAAGTTT (2) CTTTGGCTGA GAAAAAAAAA (2) GAAAGAGAAA (3) GCTGCCCTAA (2) GCTGCCCTAG (2) GCTTGCTGCC GGGGGAGGGA (2) GTCACGATGT GTTGCCCTAG TTGGAGCTGG TTGGCCAGGC 526.4 0.5264 Adult retinal AAGGCACAAT AGAGGGTGAG AGCAGTTTCT ATGAACACTG (9) ATGAGCAACA ATGTCTCAAA CACACAGACA (3) CACGCTCCCG GAAAAAAAAA (2) GAGGAGGGTG GCTGCCCTAC (2) GCTGCCCTAG (2) GCTGCCCTAT GGGATATTTA GTAGACAATG GTTGCCCTAG TGCCCCGGGC TTGGAGCTGG TTTGGTGTTT (7) 243 0.243 ONL AGAGGGTGAG AGCAGTTTCT ATGAACACTG (9) ATGAGCAACA ATGTCTCAAA CACACAGACA (3) CACGCTCCCG GAAAAAAAAA (2) GAAAGAGAAA (3) GCTGCCCTAG (2) GCTGCCTAGA GCTGTCCTAG (2) GTCACGATGT TGCCCCGGGC TTGGAGCTGG 258.3 0.2583