| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AACAACAGTT (2) GCCCCTGCGC (3) GTTAAACTTT (2) TTTTTGATGA
| 34.2 | 0.0342 |
| Cb medulloblastoma | GCCCCTGCGC (3) GTTAAACTTT (2)
| 9.2 | 0.0092 |
| P8 GC+1d culture | AAAACAAAGA (2) GCCCCTGCGC (3) TTTTTGATGA
| 60.5 | 0.0605 |
| P8 GC+SHH+1d culture | CAACACTTGT (2) GCCCCTGCGC (3) GTTAAACTTT (2) TTTTTGATGA
| 36.2 | 0.0362 |
| 3T3 fibroblasts | TTTTTGATGA
| 14 | 0.014 |
| E15 cortex | TTTTTGATGA
| 9.9 | 0.0099 |
| P1 cortex | GCCCCTGCGC (3) GTTAAACTTT (2) TTTTTGATGA
| 49.9 | 0.0499 |
| Hypothalamus | AACAACAGTT (2) GTTAAACTTT (2) TTTTTGATGA
| 7.2 | 0.0072 |
| E12.5 retina | GCCCCTGCGC (3) GTTAAACTTT (2) TTTTTGATGA
| 50.7 | 0.0507 |
| E14.5 retina | GCCCCTGCGC (3) TTTTTGATGA
| 10.9 | 0.0109 |
| E16.5 retina | AAAAAATCAT (2) GCCCCTGCGC (3) GTTAAACTTT (2) TTTTTGATGA
| 12.6 | 0.0126 |
| E18.5 retina | AAAACAAAGA (2) GCCCCTGCGC (3) GTTAAACTTT (2) TTTTTGATGA
| 23.6 | 0.0236 |
| P0.5 retina | AAAAAATCAT (2) AACAACAGTT (2) GCCCCTGCGC (3) TTTTTGATGA
| 23.6 | 0.0236 |
| P2.5 retina | AAAAAATCAT (2) GCCCCTGCGC (3) TTTTTGATGA
| 17.6 | 0.0176 |
| P4.5 retina | AAAAAATCAT (2) GCCCCTGCGC (3) GTTAAACTTT (2) TTTTTGATGA
| 19.8 | 0.0198 |
| P6.5 retina | AAAAAATCAT (2) AAAACAAAGA (2) GTTAAACTTT (2) TTTTTGATGA
| 11.8 | 0.0118 |
| P10.5 crx- retina | GCCCCTGCGC (3) GTTAAACTTT (2) TTTTTGATGA
| 5.7 | 0.0057 |
| P10.5 crx+ retina | GCCCCTGCGC (3) TTTTTGATGA
| 7.6 | 0.0076 |
| Adult retinal | AAAAAATCAT (2) GCCCCTGCGC (3)
| 14.8 | 0.0148 |
| ONL | AAAACAAAGA (2) GCCCCTGCGC (3) GTTAAACTTT (2) TTTTTGATGA
| 17.1 | 0.0171 |