Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.3294	Ppp5c	protein phosphatase 5, catalytic subunit	7	7 4.0 cM	19060
Gene Ontology	cytoplasm | cytosol | hydrolase activity | manganese ion binding | nucleus | phosphoprotein phosphatase activity | protein amino acid dephosphorylation | protein binding | protein serine/threonine phosphatase activity | protein serine/threonine phosphatase complex
Human Homolog	PPP5C[protein phosphatase 5, catalytic subunit]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 84 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGGTGAAGG (3) GCACACTGAA (2) GCTCCTCCCC GTGGCCGCTG GTTAAAAAAA (2) TAGGTGAAGG 27.7 0.0277 Cb medulloblastoma AAGGTGAAGG (3) CAGGTGAAGG GCTCCTCCCC GTTAAAAAAA (2) 39.2 0.0392 P8 GC+1d culture ATCAGCACTT GCACACTGAA (2) GCTCCTCCCC GCTCCTCCCT GTTAAAAAAA (2) 28.5 0.0285 P8 GC+SHH+1d culture CAGGTGAAGG GCACACTGAA (2) GCTCCTCCCC GCTCCTCCCT GTACTGGGCA GTTAAAAAAA (2) 35.1 0.0351 3T3 fibroblasts ATCAGCACTT GCACACTGAA (2) GCTCCTCCCC 14 0.014 E15 cortex GCACACTGAA (2) GCTCCTCCCC GCTCCTCCCT 39.5 0.0395 P1 cortex GCTCCTCCCC GCTCCTCCCT GTTAAAAAAA (2) 27.2 0.0272 Hypothalamus GCTCCTCCCC GTTAAAAAAA (2) 10.9 0.0109 E12.5 retina ATCAGCACTT CAGGTGAAGG GCACACTGAA (2) GCTCCTCCCC GTTAAAAAAA (2) 33.9 0.0339 E14.5 retina CAGGTGAAGG GCACACTGAA (2) GCTCCTCCCC GTACTGGGCA GTGGCCGCTG GTTAAAAAAA (2) TAGGTGAAGG 50.9 0.0509 E16.5 retina GCACACTGAA (2) GCTCCTCCCC GTGGCCGCTG GTTAAAAAAA (2) 34.4 0.0344 E18.5 retina GCACACTGAA (2) GCTCCTCCCC GCTCCTCCCT GTACTGGGCA GTTAAAAAAA (2) 43.6 0.0436 P0.5 retina CAGGTGAAGG GCTCCTCCCC GCTCCTCCCT GTGGCCGCTG GTTAAAAAAA (2) 25.6 0.0256 P2.5 retina GCACACTGAA (2) GCTCCTCCCC GCTCCTCCCT GTTAAAAAAA (2) 24.6 0.0246 P4.5 retina GCACACTGAA (2) GCTCCTCCCC GTGGCCGCTG GTTAAAAAAA (2) TAGGTGAAGG 27.8 0.0278 P6.5 retina GCACACTGAA (2) GCTCCTCCCC GCTCCTCCCT GTTAAAAAAA (2) 28.4 0.0284 P10.5 crx- retina GCACACTGAA (2) GCTCCTCCCC GTTAAAAAAA (2) 20.4 0.0204 P10.5 crx+ retina GCACACTGAA (2) GCTCCTCCCC GCTCCTCCCT GTGGCCGCTG GTTAAAAAAA (2) 34.5 0.0345 Adult retinal GCACACTGAA (2) GCTCCTCCCC 7.5 0.0075 ONL AAGGTGAAGG (3) GCTCCTCCCC GTTAAAAAAA (2) 15.3 0.0153