Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.3294	Ppp5c	protein phosphatase 5, catalytic subunit	7	7 4.0 cM	19060
Gene Ontology	cytoplasm | cytosol | hydrolase activity | manganese ion binding | nucleus | phosphoprotein phosphatase activity | protein amino acid dephosphorylation | protein binding | protein serine/threonine phosphatase activity | protein serine/threonine phosphatase complex
Human Homolog	PPP5C[protein phosphatase 5, catalytic subunit]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 84 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCTCCTCCCC (3) 9.8 0.0098 P8 Cb GC GCACACTGAA (4) 8.2 0.0082 P8 Cb GC GTTAAAAAAA (26) 4.9 0.0049 P8 Cb GC AAGGTGAAGG (5) 1.6 0.0016 P8 Cb GC GTGGCCGCTG 1.6 0.0016 P8 Cb GC TAGGTGAAGG (2) 1.6 0.0016 Cb medulloblastoma GTTAAAAAAA (26) 25.4 0.0254 Cb medulloblastoma GCTCCTCCCC (3) 9.2 0.0092 Cb medulloblastoma AAGGTGAAGG (5) 2.3 0.0023 Cb medulloblastoma CAGGTGAAGG (3) 2.3 0.0023 P8 GC+1d culture GTTAAAAAAA (26) 13.7 0.0137 P8 GC+1d culture GCTCCTCCCC (3) 6.8 0.0068 P8 GC+1d culture GCACACTGAA (4) 4.6 0.0046 P8 GC+1d culture GCTCCTCCCT (4) 2.3 0.0023 P8 GC+1d culture ATCAGCACTT (2) 1.1 0.0011 P8 GC+SHH+1d culture GTTAAAAAAA (26) 16.4 0.0164 P8 GC+SHH+1d culture GCTCCTCCCC (3) 7 0.007 P8 GC+SHH+1d culture GCACACTGAA (4) 4.7 0.0047 P8 GC+SHH+1d culture GCTCCTCCCT (4) 3.5 0.0035 P8 GC+SHH+1d culture CAGGTGAAGG (3) 2.3 0.0023 P8 GC+SHH+1d culture GTACTGGGCA (3) 1.2 0.0012 3T3 fibroblasts GCTCCTCCCC (3) 7 0.007 3T3 fibroblasts ATCAGCACTT (2) 3.5 0.0035 3T3 fibroblasts GCACACTGAA (4) 3.5 0.0035 E15 cortex GCACACTGAA (4) 14.8 0.0148 E15 cortex GCTCCTCCCT (4) 14.8 0.0148 E15 cortex GCTCCTCCCC (3) 9.9 0.0099 P1 cortex GCTCCTCCCT (4) 18.2 0.0182 P1 cortex GCTCCTCCCC (3) 4.5 0.0045 P1 cortex GTTAAAAAAA (26) 4.5 0.0045 Hypothalamus GTTAAAAAAA (26) 9.1 0.0091 Hypothalamus GCTCCTCCCC (3) 1.8 0.0018 E12.5 retina GCTCCTCCCC (3) 16.9 0.0169 E12.5 retina GCACACTGAA (4) 7.5 0.0075 E12.5 retina CAGGTGAAGG (3) 3.8 0.0038 E12.5 retina GTTAAAAAAA (26) 3.8 0.0038 E12.5 retina ATCAGCACTT (2) 1.9 0.0019 E14.5 retina GTTAAAAAAA (26) 20 0.02 E14.5 retina GCACACTGAA (4) 14.6 0.0146 E14.5 retina GCTCCTCCCC (3) 5.5 0.0055 E14.5 retina CAGGTGAAGG (3) 3.6 0.0036 E14.5 retina GTACTGGGCA (3) 3.6 0.0036 E14.5 retina GTGGCCGCTG 1.8 0.0018 E14.5 retina TAGGTGAAGG (2) 1.8 0.0018 E16.5 retina GTTAAAAAAA (26) 16.3 0.0163 E16.5 retina GCTCCTCCCC (3) 9.1 0.0091 E16.5 retina GCACACTGAA (4) 5.4 0.0054 E16.5 retina GTGGCCGCTG 3.6 0.0036 E18.5 retina GTTAAAAAAA (26) 27.3 0.0273 E18.5 retina GCACACTGAA (4) 10.9 0.0109 E18.5 retina GCTCCTCCCC (3) 1.8 0.0018 E18.5 retina GCTCCTCCCT (4) 1.8 0.0018 E18.5 retina GTACTGGGCA (3) 1.8 0.0018 P0.5 retina GCTCCTCCCC (3) 7.9 0.0079 P0.5 retina CAGGTGAAGG (3) 5.9 0.0059 P0.5 retina GCTCCTCCCT (4) 5.9 0.0059 P0.5 retina GTTAAAAAAA (26) 3.9 0.0039 P0.5 retina GTGGCCGCTG 2 0.002 P2.5 retina GCACACTGAA (4) 8.8 0.0088 P2.5 retina GCTCCTCCCC (3) 7 0.007 P2.5 retina GTTAAAAAAA (26) 7 0.007 P2.5 retina GCTCCTCCCT (4) 1.8 0.0018 P4.5 retina GTTAAAAAAA (26) 11.9 0.0119 P4.5 retina GCTCCTCCCC (3) 7.9 0.0079 P4.5 retina GTGGCCGCTG 4 0.004 P4.5 retina GCACACTGAA (4) 2 0.002 P4.5 retina TAGGTGAAGG (2) 2 0.002 P6.5 retina GTTAAAAAAA (26) 15 0.015 P6.5 retina GCTCCTCCCC (3) 6.7 0.0067 P6.5 retina GCACACTGAA (4) 5 0.005 P6.5 retina GCTCCTCCCT (4) 1.7 0.0017 P10.5 crx- retina GCTCCTCCCC (3) 11.1 0.0111 P10.5 crx- retina GTTAAAAAAA (26) 5.6 0.0056 P10.5 crx- retina GCACACTGAA (4) 3.7 0.0037 P10.5 crx+ retina GTTAAAAAAA (26) 15.4 0.0154 P10.5 crx+ retina GCTCCTCCCC (3) 11.5 0.0115 P10.5 crx+ retina GCACACTGAA (4) 3.8 0.0038 P10.5 crx+ retina GCTCCTCCCT (4) 1.9 0.0019 P10.5 crx+ retina GTGGCCGCTG 1.9 0.0019 Adult retinal GCTCCTCCCC (3) 5.6 0.0056 Adult retinal GCACACTGAA (4) 1.9 0.0019 ONL AAGGTGAAGG (5) 9.6 0.0096 ONL GTTAAAAAAA (26) 3.8 0.0038 ONL GCTCCTCCCC (3) 1.9 0.0019