Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.3819	Col12a1	procollagen, type XII, alpha 1	9	9 43.0 cM	12816
Mm.3819	AW743884	expressed sequence AW743884	9		102813
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 173 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AATCTGAGGA GAATAATGAA GGACCCGGAA (2) GTGGCTCTGT (2) TGCCGCGTGT TGGAAAAATA (3) TTTTTTTTTT (2) 24.4 0.0244 Cb medulloblastoma ATAAAAAAGA (3) ATGCTGTATA (2) CAGAATGCTG (2) CAGATGTATG GTGGCTCTGT (2) TACATACTCC (4) TGCATCAAGG TGCCCATCAG (2) TGCCGCGTGT TGGAAAAATA (3) TTTGGCAAAA (2) TTTTAATGAA TTTTTTTTTT (2) 80.7 0.0807 P8 GC+1d culture ATAAAAAAGA (3) ATGCTGTATA (2) CAGAATGCTG (2) CAGACCAGGC (2) CCTGTGAGGG CTGTGGAATG GCCCCGCCCC GGACCCGGAA (2) GTGGCTCTGT (2) TACAAGGCCT TGCCCATCAG (2) TGCCGCGTGT TTTGGCAAAA (2) TTTTTTTTTT (2) 39.8 0.0398 P8 GC+SHH+1d culture ACGCTTGGTG (3) ATAAAAAAGA (3) ATGCTGTATA (2) CAGAATGCTG (2) CAGATGTATG CCTGTGAGGG CTGTGGAATG GAATAATGAA GGACCCGGAA (2) GTGGCTCTGT (2) TGCCCATCAG (2) TGCCGCGTGT TGGAAAAATA (3) TTTGGCAAAA (2) TTTTTTTTTT (2) 35.1 0.0351 3T3 fibroblasts CCTGTGAGGG GGACCCGGAA (2) GTGGCTCTGT (2) TACAAGGCCT 17.5 0.0175 E15 cortex GTGGCTCTGT (2) TGCATCAAGG TGCCGCGTGT TTTTTTTTTT (2) 24.6 0.0246 P1 cortex AATCTGAGGA CAGAATGCTG (2) CAGATGTATG GCCCCGCCCC TTTGGCAAAA (2) TTTTTTTTTT (2) 36.1 0.0361 Hypothalamus ATAAAAAAGA (3) CAGAATGCTG (2) CAGATGTATG CTGTGGAATG GGACCCGGAA (2) TACATACTCC (4) TGCCCATCAG (2) TGCCGCGTGT TTTACAAAAA (2) TTTTAATGAA TTTTTTTTTT (2) 32.4 0.0324 E12.5 retina ATAAAAAAGA (3) CAGAATGCTG (2) GGACCCGGAA (2) TGCCCATCAG (2) TGCCGCGTGT TTTTAATGAA TTTTTTTTTT (2) 22.6 0.0226 E14.5 retina AATCTGAGGA ATGCTGTATA (2) GGACCCGGAA (2) TTTTTTTTTT (2) 34.6 0.0346 E16.5 retina ATTACGCCAA CCCCACCCTT GCCCCGCCCC GGACCCGGAA (2) TTTACAAAAA (2) TTTTTTTTTT (2) 27.1 0.0271 E18.5 retina CAGAATGCTG (2) GAATAATGAA GCCCCGCCCC GGACCCGGAA (2) TGCCCATCAG (2) TTTTTTTTTT (2) 30.8 0.0308 P0.5 retina ATTACGCCAA CAGAATGCTG (2) CTGTGGAATG GGACCCGGAA (2) GTGGCTCTGT (2) TGCCCATCAG (2) TGCCGCGTGT TTTTTTTTTT (2) 27.6 0.0276 P2.5 retina AACAAGTAGA ACGCTTGGTG (3) ATAAAAAAGA (3) CAGAATGCTG (2) CAGAATGTGT (2) CAGATGTATG CCCCACCCTT GGACCCGGAA (2) GTGGCTCTGT (2) TGCCCATCAG (2) TGCCGCGTGT TTTTTTTTTT (2) 39 0.039 P4.5 retina ATAAAAAAGA (3) CAGAATGCTG (2) GCCCCGCCCC GGACCCGGAA (2) GTGGCTCTGT (2) TGCCGCGTGT TTTTAATGAA TTTTTTTTTT (2) 29.9 0.0299 P6.5 retina AACAAGTAGA ATAAAAAAGA (3) CAGAATGCTG (2) CAGATGTATG CTGTGGAATG GGACCCGGAA (2) GTGGCTCTGT (2) TGCCGCGTGT TTTACAAAAA (2) TTTTAATGAA TTTTTTTTTT (2) 35.1 0.0351 P10.5 crx- retina AATCTGAGGA ATAAAAAAGA (3) CAGAATGCTG (2) CAGATGTATG CTGTGGAATG GGACCCGGAA (2) GTGGCTCTGT (2) TGCCCATCAG (2) TGCCGCGTGT 24.5 0.0245 P10.5 crx+ retina AACAAGTAGA AATCTGAGGA ACGCTTGGTG (3) ATGCTGTATA (2) CAGAATGCTG (2) CAGACCAGGC (2) CAGATGTATG GGACCCGGAA (2) GTGGCTCTGT (2) TACAAGGCCT TGCATCAAGG TGCCCATCAG (2) TGCCGCGTGT TTTTTTTTTT (2) 65.2 0.0652 Adult retinal ATTACGCCAA CAGAATGCTG (2) CAGAATGTGT (2) CAGATGTATG GCCCCGCCCC GGACCCGGAA (2) TGCCCATCAG (2) TTTTTTTTTT (2) 35.4 0.0354 ONL ATAAAAAAGA (3) CAGAATGTGT (2) CAGACCAGGC (2) CAGATGTATG GTGGCTCTGT (2) TTTTTTTTTT (2) 17.1 0.0171