Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.40424	Kcna1	potassium voltage-gated channel, shaker-related subfamily, member 1	6	6 61.0 cM	16485
Gene Ontology	cation channel activity | cation transport | integral to membrane | integral to plasma membrane | ion channel activity | ion transport | membrane | potassium channel activity | potassium ion transport | transport | voltage-gated ion channel activity | voltage-gated potassium channel activity | voltage-gated potassium channel complex
Human Homolog	KCNA1[potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 48 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAAAAAAAAA (2) TAGCGCGCCC (3) 47.3 0.0473 Cb medulloblastoma ATCTGTTCAT GAAAAAAAAA (2) GAGATCGAAG TAGGGCCCTA 191.8 0.1918 P8 GC+1d culture ATCTGTTCAT GAAAAAAAAA (2) TAGCGCGCCC (3) 44.5 0.0445 P8 GC+SHH+1d culture ATCTGTTCAT GAAAAAAAAA (2) 80.8 0.0808 3T3 fibroblasts GACCCTTGGG (2) TAGCGCGCCC (3) 10.5 0.0105 E15 cortex GAAAAAAAAA (2) GACCCTTGGG (2) TAGGGCCCTA 69.2 0.0692 P1 cortex GAAAAAAAAA (2) 45.5 0.0455 Hypothalamus GAAAAAAAAA (2) GACCCTTGGG (2) GAGATCGAAG 70.6 0.0706 E12.5 retina GAAAAAAAAA (2) GACCCTTGGG (2) 50.7 0.0507 E14.5 retina GAAAAAAAAA (2) 34.6 0.0346 E16.5 retina GAAAAAAAAA (2) GACCCTTGGG (2) 25.3 0.0253 E18.5 retina GAAAAAAAAA (2) 65.5 0.0655 P0.5 retina GAAAAAAAAA (2) GACCCTTGGG (2) 41.2 0.0412 P2.5 retina AAGTGACAGA (2) GAAAAAAAAA (2) GACCCTTGGG (2) GGTTTCATTT 91.6 0.0916 P4.5 retina GAAAAAAAAA (2) GACCCTTGGG (2) 57.4 0.0574 P6.5 retina GAAAAAAAAA (2) GACCCTTGGG (2) GGTTTCATTT 43.4 0.0434 P10.5 crx- retina ATCTGTTCAT GAAAAAAAAA (2) 20.4 0.0204 P10.5 crx+ retina AAGTGACAGA (2) GAAAAAAAAA (2) GACCCTTGGG (2) 46.1 0.0461 Adult retinal AAGTGACAGA (2) ATCTGTTCAT GAAAAAAAAA (2) GACCCTTGGG (2) GGTTTCATTT 26.1 0.0261 ONL GAAAAAAAAA (2) 24.9 0.0249