Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.41367	Ddx42	DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	11		72047
Gene Ontology	ATP binding | ATP dependent helicase activity | helicase activity | hydrolase activity | nucleic acid binding
Human Homolog	DDX42[DEAD (Asp-Glu-Ala-Asp) box polypeptide 42]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 112 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAGCACTGA (2) ATGTGAAATG CCTTGAGTCC GAGGAAGTGC (2) GAGGAAGTGT GGCTGTACTG GTACTCCTCT (2) TTAAAAAAAA (2) TTTTTTTTTT (2) 44 0.044 Cb medulloblastoma ACCAGTTCTA (3) ATGTGAAATG GAGAACCTGA GAGGAAGTGC (2) GGCTGTACTG TTAAAAAAAA (2) TTTTTTTTTT (2) 73.9 0.0739 P8 GC+1d culture AAAGCACTGA (2) ATGTGAAATG GAGGAAGTGC (2) GAGGAAGTGT GGCTGTACTG TTAAAAAAAA (2) TTTTTTTTTT (2) 60.3 0.0603 P8 GC+SHH+1d culture AAAGCACTGA (2) ACCAGTTCTA (3) ATGTGAAATG GGCTGTACTG TTAAAAAAAA (2) TTTTTTTTTT (2) 52.8 0.0528 3T3 fibroblasts AAAGCACTGA (2) ACCAGTTCTA (3) GAGGAAGTGC (2) GTACTCCTCT (2) 21 0.021 E15 cortex TTAAAAAAAA (2) TTTTTTTTTT (2) 9.8 0.0098 P1 cortex ATGTGAAATG GGCTGTACTG TTAAAAAAAA (2) TTTTTTTTTT (2) 36.2 0.0362 Hypothalamus ACCAGTTCTA (3) ATGTGAAATG GGCTGTACTG TTAAAAAAAA (2) TTTTTTTTTT (2) 34.3 0.0343 E12.5 retina AAAGCACTGA (2) ACCAGTTCTA (3) ATGTGAAATG GGCTGTACTG TTAAAAAAAA (2) TTTTTTTTTT (2) 58.3 0.0583 E14.5 retina AAAGCACTGA (2) ACCAGTTCTA (3) ATGTGAAATG GGCTGTACTG GTACTCCTCT (2) TTAAAAAAAA (2) TTTTTTTTTT (2) 61.9 0.0619 E16.5 retina AAGAGACTTG ACCAGTTCTA (3) ATGTGAAATG CCTTGAGTCC GAGGAAGTGC (2) GGCTGTACTG GTACTCCTCT (2) TTAAAAAAAA (2) TTTTTTTTTT (2) 39.7 0.0397 E18.5 retina ATGTGAAATG GAGGAAGTGC (2) GGCTGTACTG TTAAAAAAAA (2) TTTTTTTTTT (2) 78.1 0.0781 P0.5 retina AAAGCACTGA (2) ACCAGTTCTA (3) CCTTGAGTCC GAGAACCTGA GAGGAAGTGC (2) TTAAAAAAAA (2) TTTTTTTTTT (2) 41.4 0.0414 P2.5 retina AAGAGACTTG ATGTGAAATG GGCTGTACTG TTAAAAAAAA (2) TTTTTTTTTT (2) 61.6 0.0616 P4.5 retina ACCAGTTCTA (3) ATGTGAAATG GGCTGTACTG TTAAAAAAAA (2) TTTTTTTTTT (2) 71.4 0.0714 P6.5 retina AAAGCACTGA (2) ATGTGAAATG CCTTGAGTCC GAGGAAGTGC (2) GGCTGTACTG TTAAAAAAAA (2) TTTTTTTTTT (2) 36.7 0.0367 P10.5 crx- retina ATGTGAAATG GGCTGTACTG TTAAAAAAAA (2) 33.4 0.0334 P10.5 crx+ retina ACCAGTTCTA (3) ATGTGAAATG GAGGAAGTGT TTAAAAAAAA (2) TTTTTTTTTT (2) 24.9 0.0249 Adult retinal ATGTGAAATG GGCTGTACTG TTAAAAAAAA (2) TTTTTTTTTT (2) 25.9 0.0259 ONL AAAGCACTGA (2) ACCAGTTCTA (3) GAGAACCTGA TTAAAAAAAA (2) TTTTTTTTTT (2) 19.1 0.0191