Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.4159	Thbs1	thrombospondin 1	2	2 65.0 cM	21825
Gene Ontology	calcium ion binding | cell adhesion | extracellular | extracellular space | extracellular space | heparin binding | negative regulation of angiogenesis | protein binding | structural molecule activity
Human Homolog	THBS1[thrombospondin 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 57 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CATATGTATA (3) CCATATGTGA CTGGCTGCCC (2) GCCAACAAAC (2) 11.4 0.0114 Cb medulloblastoma CCATATGTGA CTGGCTGCCC (2) GCCAACAAAC (2) 9.2 0.0092 P8 GC+1d culture CCATATGTGA 5.7 0.0057 P8 GC+SHH+1d culture CCATATGTGA CTGCTGCCCT (5) CTGGCTGCCC (2) GCCAACAAAC (2) 7 0.007 3T3 fibroblasts CCATATGTGA GATTTTTCCA 21 0.021 E15 cortex CCATATGTGA CTGCTGCCCT (5) 9.8 0.0098 P1 cortex CTGCTGCCCT (5) CTGGCTGCCC (2) 9 0.009 Hypothalamus CTGGCTGCCC (2) GCCAACAAAC (2) 3.6 0.0036 E12.5 retina CCATATGTGA CTGCTGCCCT (5) TCCAAGAATG 13.2 0.0132 E14.5 retina CCATATGTGA CTGCTGCCCT (5) GCCAACAAAC (2) TCCAAGAATG 18.1 0.0181 E16.5 retina CCATATGTGA CTGCTGCCCT (5) GCCAACAAAC (2) TCCAAGAATG 29 0.029 E18.5 retina CCATATGTGA GCCAACAAAC (2) TCCAAGAATG 7.2 0.0072 P0.5 retina CATATGTATA (3) CCATATGTGA CTGCTGCCCT (5) GCCAACAAAC (2) TCCAAGAATG 13.8 0.0138 P2.5 retina CCATATGTGA GCCAACAAAC (2) 21.1 0.0211 P4.5 retina CCATATGTGA CTGCTGCCCT (5) GCCAACAAAC (2) TCCAAGAATG 13.9 0.0139 P6.5 retina CCATATGTGA TCCAAGAATG 6.6 0.0066 P10.5 crx- retina CCATATGTGA CTGCTGCCCT (5) 7.5 0.0075 P10.5 crx+ retina CCATATGTGA GCCAACAAAC (2) 9.6 0.0096 Adult retinal CCATATGTGA CTGCTGCCCT (5) CTGGCTGCCC (2) GCCAACAAAC (2) 14.9 0.0149 ONL CCATATGTGA GCCAACAAAC (2) 9.5 0.0095