| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAAATGTAG (3) AGGGCCATCC (2) CAAATTAAAA (2) CAAATTAACC (2) GAGAAGCAGC TAAGACCTTA (2) TCCTCTGGGG (2) TCTGTGTTAA TGTCTATTTG TTGTGGCGCT TTTCTATTTG
| 56.9 | 0.0569 |
| Cb medulloblastoma | AAAAATGTAG (3) AGGGCCATCC (2) TAAGACCTTA (2)
| 30 | 0.03 |
| P8 GC+1d culture | AGGGCCATCC (2) AGTTGGGAAG (2) CAAATTAAAA (2) CAAATTAACC (2) TAAGACCTTA (2) TCCTCTGGGG (2) TGTCTATTTG
| 23.9 | 0.0239 |
| P8 GC+SHH+1d culture | AGGGCCATCC (2) AGTTGGGAAG (2) CAAATTAAAA (2) CAAATTAACC (2) TAAGACCTTA (2) TGTCTATTTG TTGTGGCGCT
| 48 | 0.048 |
| 3T3 fibroblasts | AGGGCCATCC (2) CAAATTAACC (2) CCTACAGCAG GTCATAGCTG (2) TCCTCTGGGG (2) TCTGTGTTAA
| 38.5 | 0.0385 |
| E15 cortex | AGGGCCATCC (2) CAAATTAACC (2) CCTACAGCAG GAGAAGCAGC GTCATAGCTG (2)
| 29.5 | 0.0295 |
| P1 cortex | CAAATTAAAA (2)
| 4.5 | 0.0045 |
| Hypothalamus | AAAAATGTAG (3) AGGGCCATCC (2) CAAATTAACC (2) TAAGACCTTA (2)
| 27.1 | 0.0271 |
| E12.5 retina | CAAATTAAAA (2) CAAATTAACC (2) GAGAAGCAGC TCCTCTGGGG (2) TGTCTATTTG
| 41.3 | 0.0413 |
| E14.5 retina | AAAAATGTAG (3) AGGGCCATCC (2) AGGGCGATCC AGTTGGGAAG (2) CAAATTAAAA (2) CAAATTAACC (2) TAAGACCTTA (2) TCCTCTGGGG (2) TGTCTATTTG TTGTGGCGCT
| 50.8 | 0.0508 |
| E16.5 retina | AAAAATGTAG (3) AGTTGGGAAG (2) CAAATTAAAA (2) CAAATTAACC (2) CCTACAGCAG TAAGACCTTA (2) TACAAAAGAT (2) TGTCTATTTG
| 57.9 | 0.0579 |
| E18.5 retina | AAAAATGTAG (3) CAAATTAAAA (2) CAAATTAACC (2) TAAGACCTTA (2) TACAAAAGAT (2) TGTCTATTTG
| 67.3 | 0.0673 |
| P0.5 retina | AGGGCCATCC (2) AGGGCGATCC CAAATTAAAA (2) CAAATTAACC (2) GTCATAGCTG (2) TAAGACCTTA (2) TACAAAAGAT (2) TCCTCTGGGG (2) TGTCTATTTG
| 45.3 | 0.0453 |
| P2.5 retina | AGGGCCATCC (2) CAAATTAAAA (2) CAAATTAACC (2) GTCATAGCTG (2) TGTCTATTTG
| 45.8 | 0.0458 |
| P4.5 retina | AGGGCCATCC (2) AGGGCGATCC CAAATTAAAA (2) CAAATTAACC (2) GTCATAGCTG (2) TAAGACCTTA (2) TGTCTATTTG TTTCTATTTG
| 43.7 | 0.0437 |
| P6.5 retina | AGGGCCATCC (2) AGTTGGGAAG (2) CAAATTAAAA (2) CAAATTAACC (2) GTCATAGCTG (2) TACAAAAGAT (2)
| 15.1 | 0.0151 |
| P10.5 crx- retina | AGGGCCATCC (2) TAAGACCTTA (2) TGTCTATTTG
| 13.1 | 0.0131 |
| P10.5 crx+ retina | AGGGCCATCC (2) CAAATTAACC (2)
| 5.7 | 0.0057 |
| Adult retinal | AGGGCCATCC (2) AGGGCGATCC CAAATTAACC (2) GAGAAGCAGC GTCATAGCTG (2) TAAGACCTTA (2) TCCTCTGGGG (2) TTGTGGCGCT
| 20.6 | 0.0206 |
| ONL | AAAAATGTAG (3) CAAATTAAAA (2) GTCATAGCTG (2) TAAGACCTTA (2) TACAAAAGAT (2) TCTGTGTTAA
| 17.1 | 0.0171 |