Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.44876	Trim2	tripartite motif protein 2	3		80890
Gene Ontology	cytoplasm | intracellular | protein binding | protein ubiquitination | ubiquitin ligase complex | ubiquitin-protein ligase activity | zinc ion binding
Human Homolog	TRIM2[tripartite motif-containing 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 75 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATGGTGATGT CACAAAAGTC (2) 6.5 0.0065 Cb medulloblastoma ATGGTGATGT ATTTGTAGCT CACAAAAGTC (2) GAGACCAGGA (2) GATGTGCTGC (2) GATTTGCCAT GTAACGATAT TTTGATGATG (2) 57.8 0.0578 P8 GC+1d culture CACAAAAGTC (2) TTTGATGATG (2) 4.5 0.0045 P8 GC+SHH+1d culture CACAAAAGTC (2) 3.5 0.0035 3T3 fibroblasts ATGGTGATGT 3.5 0.0035 E15 cortex ATGGTGATGT CACAAAAGTC (2) 14.8 0.0148 P1 cortex ATGGTGATGT CCAGGAAATG 9 0.009 Hypothalamus ACGCTAATCT ATGGTGATGT CACAAAAGTC (2) GAGACCAGGA (2) GTAACGATAT 19.9 0.0199 E12.5 retina AAACTAAAGG ATGGTGATGT CACAAAAGTC (2) GCAGCCTCTT (3) 13.2 0.0132 E14.5 retina ATGGTGATGT CACAAAAGTC (2) CCAGGAAATG GCAGCCTCTT (3) GTAACGATAT TTTTTGCTTA (2) 18.1 0.0181 E16.5 retina AAACTAAAGG ATGGTGATGT ATTACGCCAA CACAAAAGTC (2) TTTGATGATG (2) 23.5 0.0235 E18.5 retina ATGGTGATGT ATTTGTAGCT CACAAAAGTC (2) GAGACCAGGA (2) TTTTTGCTTA (2) 18.2 0.0182 P0.5 retina ATTACGCCAA GATGTGCTGC (2) TTTGATGATG (2) 6 0.006 P2.5 retina ATGGTGATGT ATTTGTAGCT CACAAAAGTC (2) GATGTGCTGC (2) 21.2 0.0212 P4.5 retina CACAAAAGTC (2) GCAGCCTCTT (3) 11.9 0.0119 P6.5 retina CACAAAAGTC (2) CCAGGAAATG GAGACCAGGA (2) GCAGCCTCTT (3) GTAACGATAT TTTTTGCTTA (2) 18.4 0.0184 P10.5 crx- retina CACAAAAGTC (2) GAGACCAGGA (2) GCAGCCTCTT (3) GTAACGATAT 13.1 0.0131 P10.5 crx+ retina ACGCTAATCT ATTTGTAGCT CACAAAAGTC (2) GATTTGCCAT GTAACGATAT TTTTTGCTTA (2) 21 0.021 Adult retinal ATGGTGATGT ATTACGCCAA ATTTGTAGCT CACAAAAGTC (2) GAGACCAGGA (2) GATTTGCCAT 20.5 0.0205 ONL CACAAAAGTC (2) 3.8 0.0038