| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAATAAATGT (3) CAATAAATGT (2) TCTGCTGTTC (2) TGCGACTGTT (2) TTTTGTGTTC
| 32.6 | 0.0326 |
| Cb medulloblastoma | AAATAAATGT (3) ATCCTCTTGG (5) ATGTAAAAAA (3) TTTTGTGTTC
| 20.7 | 0.0207 |
| P8 GC+1d culture | AAATAAATGT (3)
| 8 | 0.008 |
| P8 GC+SHH+1d culture | AAATAAATGT (3) AAATCAAAAC (2) ATGTAAAAAA (3) CAATAAATGT (2) TCTGCTGTTC (2)
| 9.5 | 0.0095 |
| 3T3 fibroblasts | ATCCTCTTGG (5) TGCGACTGTT (2)
| 7 | 0.007 |
| P1 cortex | ATCCTCTTGG (5) TTTTGTGTTC
| 13.6 | 0.0136 |
| Hypothalamus | AAAATCAAAA AAATAAATGT (3) AAATCAAAAC (2) TCTGCTGTTC (2) TTTTGTGTTC
| 30.7 | 0.0307 |
| E12.5 retina | AAATAAATGT (3) CAATAAATGT (2) TTTTGTGTTC
| 11.3 | 0.0113 |
| E14.5 retina | AAATAAATGT (3) CAATAAATGT (2) TTTTGTGTTC
| 14.6 | 0.0146 |
| E16.5 retina | AAATAAATGT (3) CAATAAATGT (2)
| 12.7 | 0.0127 |
| E18.5 retina | AAAATCAAAA AAATAAATGT (3) ATGTAAAAAA (3) CAATAAATGT (2)
| 21.7 | 0.0217 |
| P0.5 retina | TCTGCTGTTC (2) TTTTGTGTTC
| 5.9 | 0.0059 |
| P2.5 retina | AAATAAATGT (3) CAATAAATGT (2) TCTGCTGTTC (2) TTTTGTGTTC
| 10.7 | 0.0107 |
| P4.5 retina | AAATAAATGT (3) ATGTAAAAAA (3) TTTTGTGTTC
| 11.9 | 0.0119 |
| P6.5 retina | AAATAAATGT (3) TTTTGTGTTC
| 10 | 0.01 |
| P10.5 crx- retina | AAATAAATGT (3) AAATCAAAAC (2) ATCCTCTTGG (5) TCTGCTGTTC (2)
| 11.2 | 0.0112 |
| P10.5 crx+ retina | AAATAAATGT (3) TCTGCTGTTC (2) TTTTGTGTTC
| 11.5 | 0.0115 |
| Adult retinal | AAATAAATGT (3) AAATCAAAAC (2) TTTTGTGTTC
| 13 | 0.013 |
| ONL | AAAATCAAAA AAATAAATGT (3)
| 5.7 | 0.0057 |