Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.5260	Slc6a1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	3	6 E3 (3 50.4 cM)	232333
Gene Ontology	gamma-aminobutyric acid:sodium symporter activity | integral to membrane | integral to plasma membrane | membrane | neurotransmitter transport | neurotransmitter:sodium symporter activity | symporter activity | transport
Human Homolog	SLC6A1[solute carrier family 6 (neurotransmitter transporter, GABA), member 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 7 In Situ Hybridization Images

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SAGE Tags

Total 75 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAGAGAGGGG TACGTTTCTA TGGCTGGGGG (3) 14.6 0.0146 Cb medulloblastoma TACGTTTCTA 48.6 0.0486 P8 GC+1d culture CTGCTGATGC (2) TACGTTTCTA TGGCTGGGGG (3) 5.7 0.0057 P8 GC+SHH+1d culture AGGGACAGGT TACGTTTCTA TGGCTGGGGG (3) TTTGTAAGCA 12.8 0.0128 3T3 fibroblasts AGGGACAGGT CTGCTGATGC (2) 7 0.007 E15 cortex CTGCTGATGC (2) TACGTTTCTA 9.8 0.0098 P1 cortex AGGGACAGGT TACGTTTCTA 22.7 0.0227 Hypothalamus AGGGACAGGT CAGAGAGGGG CTGCTGATGC (2) TACGTTTCTA 47 0.047 E14.5 retina CTGCTGATGC (2) TGGCTGGGGG (3) 3.6 0.0036 E16.5 retina AGGGACAGGT TACGTTTCTA TATAAATATT TCCTTGCAAA TGGCTGGGGG (3) 23.5 0.0235 E18.5 retina AAGATGTGTT CAGAGAGGGG CTGCTGATGC (2) TACGTTTCTA TCCACTTGGA TCCTTGCAAA 34.4 0.0344 P0.5 retina CTGCTGATGC (2) TACGTTTCTA TCCACTTGGA TCCTTGCAAA 17.7 0.0177 P2.5 retina AAGATGTGTT AGGGACAGGT TACGTTTCTA TCCACTTGGA TCCTTGCAAA 44 0.044 P4.5 retina AGGGACAGGT CAGAGAGGGG CTGCTGATGC (2) TACGTTTCTA TATAAATATT TCCTTGCAAA TTTGTAAGCA 87.3 0.0873 P6.5 retina AGGGACAGGT CTGCTGATGC (2) TACGTTTCTA TCCTTGCAAA 133.3 0.1333 P10.5 crx- retina AGGGACAGGT CTGCTGATGC (2) TACGTTTCTA TATAAATATT TCCTTGCAAA TTTGTAAGCA 72.6 0.0726 P10.5 crx+ retina AGGGACAGGT CTGCTGATGC (2) TACGTTTCTA TCCTTGCAAA TGGCTGGGGG (3) TTTGTAAGCA 294.1 0.2941 Adult retinal AGGGACAGGT CTGCTGATGC (2) TACGTTTCTA TCCTTGCAAA 329.7 0.3297 ONL AAGATGTGTT AGGGACAGGT TACGTTTCTA TCCACTTGGA TCCTTGCAAA 392.6 0.3926