Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.6534	Capns1	calpain, small subunit 1	7	7 9.5 cM	12336
Gene Ontology	calcium ion binding | calpain activity
Human Homolog	CAPNS1[calpain, small subunit 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 135 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (2) AGCTCTAAAA CCACACCTTG GACTTCCAGG (2) GCAGGTCCAC TTGAGCTCTG (2) 215.2 0.2152 Cb medulloblastoma AAAAAAAAAA (2) AGCTCTAAAA AGCTCTATAG CCACACCTTG GACTTCCAGG (2) GCAGGTCCAC TTCCGCGCTT TTGAGCTCTG (2) 830 0.83 P8 GC+1d culture AAAAAAAAAA (2) AGCTCTAAAA AGCTCTATAG CCCCACCTTG GACTTCCAGG (2) GCAGGTCCAC TTCCTGCTAC (3) 241.8 0.2418 P8 GC+SHH+1d culture AAAAAAAAAA (2) AGCTCTAAAA AGCTCTATAG GACTTCCAGG (2) GCAGGTCCAC GCCTGGAGTT (3) TTCCTGCTAC (3) TTGAGCTCTG (2) 313.8 0.3138 3T3 fibroblasts AAAAAAAAAA (2) AGCTCTAAAA AGCTCTATAG GCAGGTCCAC GCCTGGAGTT (3) TTGAGCTCTG (2) 59.5 0.0595 E15 cortex AAAAAAAAAA (2) AGCTCTATAG GACTTCCAGG (2) 232.5 0.2325 P1 cortex AAAAAAAAAA (2) AGCTCTATAG GCAGGTCCAC TTGAGCTCTG (2) 258.9 0.2589 Hypothalamus AAAAAAAAAA (2) AGCTCTAAAA CCACACCTTG GACTTCCAGG (2) GCAGGTCCAC TTCCCTCCTG TTCCGCGCTT TTCCTGCTAC (3) TTGAGCTCTG (2) 162.9 0.1629 E12.5 retina AAAAAAAAAA (2) AGCTCTAAAA GCAGGTCCAC GCCTGGAGTT (3) TTCCTGCTAC (3) TTGAGCTCTG (2) 159.6 0.1596 E14.5 retina AAAAAAAAAA (2) AGCTCTAAAA AGCTCTATAG GACTTCCAGG (2) GCAGGTCCAC GCCTGGAGTT (3) TTCCTGCTAC (3) TTGAGCTCTG (2) 127.5 0.1275 E16.5 retina AAAAAAAAAA (2) AGCTCTAAAA CCCCACCTTG GACTTCCAGG (2) GCAGGTCCAC GCCTGGAGTT (3) TTCCCTCCTG TTCCGCGCTT TTCCTGCTAC (3) TTGAGCTCTG (2) 83.3 0.0833 E18.5 retina AAAAAAAAAA (2) AGCTCTAAAA GACTTCCAGG (2) GCAGGCTCAC GCAGGTCCAC TTCCCTCCTG TTGAGCTCTG (2) 405.6 0.4056 P0.5 retina AAAAAAAAAA (2) GACTTCCAGG (2) GCAGGCTCAC GCAGGTCCAC GCCTGGAGTT (3) TTCCTGCTAC (3) TTGAGCTCTG (2) 141.5 0.1415 P2.5 retina AAAAAAAAAA (2) AGCTCTAAAA AGCTCTATAG GACTTCCAGG (2) GCAGGTCCAC TTCCTGCTAC (3) TTGAGCTCTG (2) 367.8 0.3678 P4.5 retina AAAAAAAAAA (2) AGCTCTAAAA AGCTCTATAG GACTTCCAGG (2) GCAGGTCCAC TTCCTGCTAC (3) TTGAGCTCTG (2) 334.9 0.3349 P6.5 retina AAAAAAAAAA (2) AGCTCTATAG GACTTCCAGG (2) GCAGGTCCAC TTCCTGCTAC (3) TTGAGCTCTG (2) 298.4 0.2984 P10.5 crx- retina AAAAAAAAAA (2) GACTTCCAGG (2) GCAGGCTCAC GCAGGTCCAC GCCTGGAGTT (3) TTCCTGCTAC (3) TTGAGCTCTG (2) 100.5 0.1005 P10.5 crx+ retina AAAAAAAAAA (2) AGCTCTAAAA AGCTCTATAG GACTTCCAGG (2) GCAGGCTCAC GCAGGTCCAC GCCTGGAGTT (3) TTCCTGCTAC (3) TTGAGCTCTG (2) 138.4 0.1384 Adult retinal AAAAAAAAAA (2) GACTTCCAGG (2) GCAGGTCCAC GCCTGGAGTT (3) TTGAGCTCTG (2) 87.2 0.0872 ONL AAAAAAAAAA (2) AGCTCTAAAA CCACACCTTG CCCCACCTTG GACTTCCAGG (2) 114.8 0.1148