Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.738	Col4a1	procollagen, type IV, alpha 1	8	8 5.0 cM	12826
Gene Ontology	basement membrane | cell adhesion | collagen | cytoplasm | extracellular matrix | extracellular matrix structural constituent | extracellular matrix structural constituent conferring tensile strength | extracellular space | phosphate transport
Human Homolog	COL4A1[collagen, type IV, alpha 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 79 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTGCTACTCC GTGTCTGATA (4) GTGTTAACCA 83.2 0.0832 Cb medulloblastoma GGGGAAATGG GTGTTAACCA 9.2 0.0092 P8 GC+1d culture GATGTAGTGT GCTTTCCTGT GGCACCATCT (2) GTGCTACTCC GTGTCTGATA (4) GTGTTAACCA 54.6 0.0546 P8 GC+SHH+1d culture GATGTAGTGT GGCACCATCT (2) GTGAAGGCGG GTGCTACTCC GTGTCTGATA (4) GTGTTAACCA 49.2 0.0492 3T3 fibroblasts GTGCTACTCC GTGTCTGATA (4) GTGTTAACCA 119.2 0.1192 E15 cortex GCTTCCTGTG (2) GTGAAGGCGG GTGTTAACCA 89 0.089 P1 cortex GGCACCATCT (2) GGGGAAATGG GTGTCTGATA (4) GTGTTAACCA 95.3 0.0953 Hypothalamus GGCACCATCT (2) GTGTCTGATA (4) GTGTTAACCA 12.7 0.0127 E12.5 retina GATGTAGTGT GCAGGCATTT GTGTCTGATA (4) GTGTTAACCA 52.6 0.0526 E14.5 retina GATGTAGTGT GCAGGCATTT GCTTCCTGTG (2) GCTTTCCTGT GTGCTACTCC GTGTTAACCA 19.9 0.0199 E16.5 retina GATGTAGTGT GCTTCCTGTG (2) GCTTTCCTGT GTGTCTGATA (4) GTGTTAACCA 12.6 0.0126 E18.5 retina GCTTTCCTGT GGCACCATCT (2) GTGAAGGCGG GTGTCTGATA (4) GTGTTAACCA 18.1 0.0181 P0.5 retina GGCACCATCT (2) GTGTCTGATA (4) GTGTTAACCA 88.4 0.0884 P2.5 retina GCTTCCTGTG (2) GGGGAAATGG GTGATGGCGG GTGCTACTCC GTGTTAACCA 31.8 0.0318 P4.5 retina GTGTCTGATA (4) GTGTTAACCA 11.9 0.0119 P6.5 retina GTGCTACTCC GTGTCTGATA (4) GTGTTAACCA 13.4 0.0134 P10.5 crx- retina GCTTCCTGTG (2) GGCACCATCT (2) GGGGAAATGG GTGATGGCGG GTGTTAACCA 85.6 0.0856 P10.5 crx+ retina GATGTAGTGT GCAGGCATTT GCTTCCTGTG (2) GTGTTAACCA 30.7 0.0307 Adult retinal GATGTAGTGT GCTTCCTGTG (2) GGCACCATCT (2) GTGTTAACCA 27.9 0.0279 ONL GATGTAGTGT GTGATGGCGG GTGTTAACCA 15.3 0.0153