Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.7562	4931428A05Rik	RIKEN cDNA 4931428A05 gene	1		67540
Mm.7562	Col6a3	procollagen, type VI, alpha 3	1	1 53.9 cM	12835
Gene Ontology	cell adhesion | collagen | extracellular matrix structural constituent conferring tensile strength
Human Homolog	COL6A3[collagen, type VI, alpha 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 116 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (2) AACAAACAAA (3) AGAAGTGTTT CAAACACCGT (3) CCAGCCCCTC CTGGGAAAGT TGAAACCAGC (2) 220.1 0.2201 Cb medulloblastoma AAAAAAAAAA (2) AACAAACAAA (3) AACTGCAGAG (2) GTTCCCAGTT 814 0.814 P8 GC+1d culture AAAAAAAAAA (2) AACAAACAAA (3) AACTGCAGAG (2) AGAAGTGTTT CAAACACCGT (3) CCAGCCCCTC CTGGGAAAGT GTTCCCAGTT 256.8 0.2568 P8 GC+SHH+1d culture AAAAAAAAAA (2) AACAAACAAA (3) AACTGCAGAG (2) AGAAGTGTTT CAAACACCGT (3) CCAGCCCCTC GTTCCCAGTT 316.1 0.3161 3T3 fibroblasts AAAAAAAAAA (2) CAAACACCGT (3) CCAGCCCCTC 52.5 0.0525 E15 cortex AAAAAAAAAA (2) AACTGCAGAG (2) AGAAGTGTTT CCAGCCCCTC GAAATGAAGA GTTCCCAGTT 247.3 0.2473 P1 cortex AAAAAAAAAA (2) AACAAACAAA (3) AACTGCAGAG (2) CCAGCCCCTC GAAATGAAGA 277.1 0.2771 Hypothalamus AAAAAAAAAA (2) AACAAACAAA (3) AACTGCAGAG (2) CCAGCCCCTC CTTTCCTTTG (3) GTCTCCAGCA (2) 139.4 0.1394 E12.5 retina AAAAAAAAAA (2) AACAAACAAA (3) AACTGCAGAG (2) AGAAGTGTTT CCAGCCCCTC GAAATGAAGA 182.2 0.1822 E14.5 retina AAAAAAAAAA (2) AACTGCAGAG (2) AGAAGTGTTT CCAGCCCCTC GTTCCCAGTT 105.5 0.1055 E16.5 retina AAAAAAAAAA (2) AACAAACAAA (3) AACTGCAGAG (2) AGAAGTGTTT CCAGCCCCTC GTTCCCAGTT TGAAACCAGC (2) 81.5 0.0815 E18.5 retina AAAAAAAAAA (2) AACAAACAAA (3) AACTGCAGAG (2) AGAAGTGTTT CCAGCCCCTC CTTTCCTTTG (3) 405.5 0.4055 P0.5 retina AAAAAAAAAA (2) AACAAACAAA (3) AACTGCAGAG (2) AGAAGTGTTT CCAGCCCCTC CTTTCCTTTG (3) GTCTCCAGCA (2) GTTCCCAGTT 168.8 0.1688 P2.5 retina AAAAAAAAAA (2) AACAAACAAA (3) AACTGCAGAG (2) AGAAGTGTTT CCAGCCCCTC 360.9 0.3609 P4.5 retina AAAAAAAAAA (2) AACAAACAAA (3) AACTGCAGAG (2) AGAAGTGTTT CCAGCCCCTC 319 0.319 P6.5 retina AAAAAAAAAA (2) AACAAACAAA (3) AACTGCAGAG (2) AGAAGTGTTT CCAGCCCCTC 310.1 0.3101 P10.5 crx- retina AAAAAAAAAA (2) AACAAACAAA (3) AACTGCAGAG (2) CAAACACCGT (3) CCAGCCCCTC GTTCCCAGTT TGAAACCAGC (2) 83.6 0.0836 P10.5 crx+ retina AAAAAAAAAA (2) AACAAACAAA (3) AACTGCAGAG (2) AGAAGTGTTT CCAGCCCCTC GAAATGAAGA GTTCCCAGTT 124.8 0.1248 Adult retinal AAAAAAAAAA (2) AGAAGTGTTT CAAACACCGT (3) CCAGCCCCTC CTGGGAAAGT 89 0.089 ONL AAAAAAAAAA (2) AACAAACAAA (3) AACTGCAGAG (2) CCAGCCCCTC 114.8 0.1148