Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.8681	Ptpn11	protein tyrosine phosphatase, non-receptor type 11	5		19247
Gene Ontology	activation of MAPK | axonogenesis | cell junction | DNA damage response, signal transduction resulting in cell cycle arrest | hydrolase activity | intracellular signaling cascade | membrane fraction | NGF receptor signaling pathway | non-membrane spanning protein tyrosine phosphatase activity | phosphoprotein phosphatase activity | protein amino acid dephosphorylation | protein binding | protein binding | protein-tyrosine-phosphatase activity | receptor activity | regulation of protein-nucleus export | signal transduction | stress fibers
Human Homolog	PTPN11[protein tyrosine phosphatase, non-receptor type 11 (Noonan syndrome 1)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 79 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACCACAAAGG AGTGTATCTG GCAGCTTCCT (2) GCCTGGTGGG (2) GCTGTCCAGC 21.3 0.0213 Cb medulloblastoma AGTGTATCTG GCCTGGTGGG (2) GCTGTCCAGC GGGGGGGGGG 30 0.03 P8 GC+1d culture ACCACAAAGG AGTGTATCTG GCCTGGTGGG (2) GCTGAAAGAA GGGGGGGGGG 12.5 0.0125 P8 GC+SHH+1d culture AGTGTATCTG CAGCAGCAGA (2) GCCTGGTGGG (2) GCTGTCCAGC GGGGGGGGGG 21.2 0.0212 3T3 fibroblasts ACCACAAAGG AGTGTATCTG GCCTGGTGGG (2) GCTGTCCAGC GGGGGGGGGG 31.5 0.0315 E15 cortex GCAGCTTCCT (2) GCCTGGTGGG (2) GCTGTCCAGC GGGGGGGGGG 39.5 0.0395 P1 cortex ACCACAAAGG GCCTGGTGGG (2) 27.3 0.0273 Hypothalamus GCCTGGTGGG (2) GGGGGGGGGG 30.8 0.0308 E12.5 retina ACCACAAAGG AGTGTATCTG GCCTGGTGGG (2) GCTGAAAGAA 13.2 0.0132 E14.5 retina GCCTGGTGGG (2) 10.9 0.0109 E16.5 retina AGTGTATCTG GCCTGGTGGG (2) 18.1 0.0181 E18.5 retina AGTGTATCTG GCCTGGTGGG (2) GCTGAAAGAA 23.6 0.0236 P0.5 retina ACCACAAAGG AGTGTATCTG GCCTGGTGGG (2) GCTGAAAGAA 21.7 0.0217 P2.5 retina ACCACAAAGG AGTGTATCTG GCCTGGTGGG (2) GCTGAAAGAA GGGGGGGGGG 43.9 0.0439 P4.5 retina ACCACAAAGG AGTGTATCTG GCAGCTTCCT (2) GCCTGGTGGG (2) GGGGGGGGGG 59.4 0.0594 P6.5 retina ACCACAAAGG AGTGTATCTG CAGCAGCAGA (2) GCCTGGTGGG (2) GCTGAAAGAA GGGGGGGGGG 25.1 0.0251 P10.5 crx- retina ACCACAAAGG AGTGTATCTG GCCTGGTGGG (2) 27.9 0.0279 P10.5 crx+ retina ACCACAAAGG AGTGTATCTG CAGCAGCAGA (2) GCCTGGTGGG (2) GCTGAAAGAA GGGGGGGGGG 32.6 0.0326 Adult retinal ACCACAAAGG AGTGTATCTG GCCTGGTGGG (2) GGGGGGGGGG 18.6 0.0186 ONL ACCACAAAGG CAGCAGCAGA (2) GCTGAAAGAA GGGGGGGGGG 9.5 0.0095