| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | GCAGAACCTC (2) TGTTTGTAAA (3)
| 4.9 | 0.0049 |
| Cb medulloblastoma | TGTTTGTAAA (3)
| 11.6 | 0.0116 |
| P8 GC+1d culture | ATGTGACTTT (7) GATATTAAAA (2) TGTTTGTAAA (3)
| 26.2 | 0.0262 |
| P8 GC+SHH+1d culture | ATGTGACTTT (7) ATTTCTCTTC (3) GCAGAACCTC (2) TGTTTGTAAA (3)
| 17.6 | 0.0176 |
| 3T3 fibroblasts | GCAGAACCTC (2)
| 7 | 0.007 |
| E15 cortex | GCAGAACCTC (2) TGTTTGTAAA (3)
| 14.8 | 0.0148 |
| P1 cortex | TGTTTGTAAA (3)
| 31.8 | 0.0318 |
| Hypothalamus | ATTTCTCTTC (3) TGTTTGTAAA (3)
| 7.2 | 0.0072 |
| E12.5 retina | GCAGAACCTC (2) TGTTTGTAAA (3)
| 13.2 | 0.0132 |
| E14.5 retina | TGTTTGTAAA (3)
| 16.4 | 0.0164 |
| E16.5 retina | ATTTCTCTTC (3) TGTTTGTAAA (3)
| 25.3 | 0.0253 |
| E18.5 retina | TGTTTGTAAA (3)
| 16.4 | 0.0164 |
| P0.5 retina | ATGTGACTTT (7) TGTTTGTAAA (3)
| 9.9 | 0.0099 |
| P2.5 retina | TGTTTGTAAA (3)
| 5.3 | 0.0053 |
| P4.5 retina | TGTTTGTAAA (3)
| 35.7 | 0.0357 |
| P6.5 retina | ATTTCTCTTC (3) GATATTAAAA (2) TGTTTGTAAA (3)
| 28.4 | 0.0284 |
| P10.5 crx- retina | ATTTCTCTTC (3) GCAGAACCTC (2) TGTTTGTAAA (3)
| 9.4 | 0.0094 |
| P10.5 crx+ retina | GATATTAAAA (2) TGTTTGTAAA (3)
| 9.6 | 0.0096 |
| Adult retinal | ATTTCTCTTC (3) GATATTAAAA (2)
| 7.5 | 0.0075 |
| ONL | ATTTCTCTTC (3) GATATTAAAA (2) TGTTTGTAAA (3)
| 22.9 | 0.0229 |