Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.22665	Hdac5	histone deacetylase 5	11		15184
Gene Ontology	chromatin modification | cytoplasm | histone deacetylase activity | hydrolase activity | negative regulation of transcription from Pol II promoter | nucleus | protein binding | regulation of transcription, DNA-dependent | transcription corepressor activity | transcriptional repressor activity
Human Homolog	HDAC5[histone deacetylase 5]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 46 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAGCAGGAGC (2) GGGATTCTGC 14.7 0.0147 Cb medulloblastoma GAGCAGGAGC (2) GGCTCCTCTG (2) GGGATTCTGC 34.6 0.0346 P8 GC+1d culture GAGCAGGAGC (2) GGGATTCTGC 14.8 0.0148 P8 GC+SHH+1d culture GAGCAGGAGC (2) GCGCTCACAG GGGATTCTGC 25.8 0.0258 3T3 fibroblasts GAGCAGGAGC (2) 3.5 0.0035 E15 cortex GAGCAGGAGC (2) GGGATTCTGC 39.5 0.0395 P1 cortex GCCTCCCTCC (2) 4.5 0.0045 Hypothalamus GAGCAGGAGC (2) GCCCTGCTTT GGCTCCTCTG (2) 21.7 0.0217 E12.5 retina GAGCAGGAGC (2) 13.1 0.0131 E14.5 retina GAGCAGGAGC (2) GCGCTCACAG GGCTCCTCTG (2) 14.5 0.0145 E16.5 retina GAGCAGGAGC (2) GCCTCCCTCC (2) GGCTCCTCTG (2) 30.8 0.0308 E18.5 retina GAGCAGGAGC (2) GCCTCCCTCC (2) GCGCTCACAG GGGATTCTGC 18.1 0.0181 P0.5 retina GAGCAGGAGC (2) GGGATTCTGC 23.6 0.0236 P2.5 retina GAGCAGGAGC (2) GGGATTCTGC 19.3 0.0193 P4.5 retina GAGCAGGAGC (2) GCCCTGCTTT GGGATTCTGC 33.7 0.0337 P6.5 retina GAGCAGGAGC (2) GCGCTCACAG 40 0.04 P10.5 crx- retina GAGCAGGAGC (2) GGGATTCTGC 37.2 0.0372 P10.5 crx+ retina GAGCAGGAGC (2) GCCCTGCTTT GCGCTCACAG 38.4 0.0384 Adult retinal GAGCAGGAGC (2) GGCTCCTCTG (2) GGGATTCTGC 29.7 0.0297 ONL GAGCAGGAGC (2) 13.4 0.0134