Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.29890	Shmt2	serine hydroxymethyl transferase 2 (mitochondrial)	10		108037
Gene Ontology	glycine hydroxymethyltransferase activity | methyltransferase activity | mitochondrion | mitochondrion | mitochondrion | one-carbon compound metabolism | transferase activity
Human Homolog	SHMT2[serine hydroxymethyltransferase 2 (mitochondrial)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 67 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACACCCAACT ACACCCGACT TTGTAAAATA (2) 6.5 0.0065 Cb medulloblastoma TTGTAAAATA (2) 2.3 0.0023 P8 GC+1d culture ACACCCAACT ACACCCGACT CAGTGGGCTT (2) GCCCACATCA (2) GCTGCCCGGC (2) 10.3 0.0103 P8 GC+SHH+1d culture ACACCCGACT CAGCCTGGGA GTGCAAACCT 7 0.007 3T3 fibroblasts ACACCCGACT GCCCACATCA (2) GCTGCCCGGC (2) 28 0.028 E15 cortex ACACCCGACT 9.9 0.0099 P1 cortex ACACCCGACT GCCCACATCA (2) 9 0.009 Hypothalamus GCCCACATCA (2) GCTGCCCGGC (2) GGCCACATCA (2) 14.4 0.0144 E12.5 retina ACACCCGACT CAGCCTGGGA CAGTGGGCTT (2) GCCCACATCA (2) 18.9 0.0189 E14.5 retina ACACCCAACT ACACCCGACT CAGTGGGCTT (2) GCAGAGATAC GCTGCCCGGC (2) GGCCACATCA (2) 12.6 0.0126 E16.5 retina ACACCCGACT CAGTGGGCTT (2) GCAGAGATAC GGCCACATCA (2) GTGCAAACCT 48.9 0.0489 E18.5 retina ACACCCGACT CAGTGGGCTT (2) GCAGAGATAC GGCCACATCA (2) 32.7 0.0327 P0.5 retina ACACCCGACT CAGTGGGCTT (2) GCAGAGATAC GCCCACATCA (2) TTGTAAAATA (2) 37.3 0.0373 P2.5 retina ACACCCGACT CAGTGGGCTT (2) GGCCACATCA (2) 40.5 0.0405 P4.5 retina ACACCCGACT CAGTGGGCTT (2) GCTGCCCGGC (2) GGCCACATCA (2) TTGTAAAATA (2) 37.7 0.0377 P6.5 retina ACACCCGACT CAGTGGGCTT (2) GCTGCCCGGC (2) TTGTAAAATA (2) 20 0.02 P10.5 crx- retina ACACCCGACT GCTGCCCGGC (2) TTGTAAAATA (2) 9.3 0.0093 P10.5 crx+ retina ACACCCGACT CAGTGGGCTT (2) GCTGCCCGGC (2) GGCCACATCA (2) 7.6 0.0076 Adult retinal ACACCCGACT GTGCAAACCT 5.6 0.0056 ONL TTGTAAAATA (2) 3.8 0.0038