Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.41367	Ddx42	DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	11		72047
Gene Ontology	ATP binding | ATP dependent helicase activity | helicase activity | hydrolase activity | nucleic acid binding
Human Homolog	DDX42[DEAD (Asp-Glu-Ala-Asp) box polypeptide 42]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 65 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAGCACTGA (2) ATGTGAAATG GAGGAAGTGC (2) GGCTGTACTG GTACTCCTCT (2) 22.8 0.0228 Cb medulloblastoma ACCAGTTCTA (3) ATGTGAAATG GAGGAAGTGC (2) GGCTGTACTG 16.1 0.0161 P8 GC+1d culture AAAGCACTGA (2) ATGTGAAATG GAGGAAGTGC (2) GGCTGTACTG 17 0.017 P8 GC+SHH+1d culture AAAGCACTGA (2) ACCAGTTCTA (3) ATGTGAAATG GGCTGTACTG 12.9 0.0129 3T3 fibroblasts AAAGCACTGA (2) ACCAGTTCTA (3) GAGGAAGTGC (2) GTACTCCTCT (2) 21 0.021 P1 cortex ATGTGAAATG GGCTGTACTG 18.1 0.0181 Hypothalamus ACCAGTTCTA (3) ATGTGAAATG GGCTGTACTG 7.2 0.0072 E12.5 retina AAAGCACTGA (2) ACCAGTTCTA (3) ATGTGAAATG GGCTGTACTG 39.5 0.0395 E14.5 retina AAAGCACTGA (2) ACCAGTTCTA (3) ATGTGAAATG GGCTGTACTG GTACTCCTCT (2) 21.8 0.0218 E16.5 retina AAGAGACTTG ACCAGTTCTA (3) ATGTGAAATG GAGGAAGTGC (2) GGCTGTACTG GTACTCCTCT (2) 16.2 0.0162 E18.5 retina ATGTGAAATG GAGGAAGTGC (2) GGCTGTACTG 16.3 0.0163 P0.5 retina AAAGCACTGA (2) ACCAGTTCTA (3) GAGGAAGTGC (2) 9.9 0.0099 P2.5 retina AAGAGACTTG ATGTGAAATG GGCTGTACTG 14.1 0.0141 P4.5 retina ACCAGTTCTA (3) ATGTGAAATG GGCTGTACTG 13.9 0.0139 P6.5 retina AAAGCACTGA (2) ATGTGAAATG GAGGAAGTGC (2) GGCTGTACTG 8.4 0.0084 P10.5 crx- retina ATGTGAAATG GGCTGTACTG 20.4 0.0204 P10.5 crx+ retina ACCAGTTCTA (3) ATGTGAAATG 11.5 0.0115 Adult retinal ATGTGAAATG GGCTGTACTG 11.1 0.0111 ONL AAAGCACTGA (2) ACCAGTTCTA (3) 5.7 0.0057