Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.9394	Nfix	nuclear factor I/X	8	8 38.6 cM	18032
Gene Ontology	DNA binding | DNA replication | intracellular | nucleus | regulation of transcription, DNA-dependent | transcription factor activity
Human Homolog	NFIX[nuclear factor I/X (CCAAT-binding transcription factor)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 42 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CGCCTCTCTC CGTGGGGAAC CTAAGCGGAC (2) GGCAGGACTC GTGGTGGTGG (4) 32.7 0.0327 Cb medulloblastoma CTAAGCGGAC (2) GAAATATCCC GTGGTGGTGG (4) 6.9 0.0069 P8 GC+1d culture CGCCTCTCTC CGTGGGGAAC CTAAGCGGAC (2) GGCAGGACTC 14.8 0.0148 P8 GC+SHH+1d culture CGCCTCTCTC CTAAGCGGAC (2) GGCAGGACTC 15.2 0.0152 3T3 fibroblasts CGCCTCTCTC CTAAGCGGAC (2) GGCAGGACTC 59.5 0.0595 E15 cortex CGCCTCTCTC GGCAGGACTC 59.3 0.0593 P1 cortex CGCCTCTCTC CTAAGCGGAC (2) GAAATATCCC GGCAGGACTC 54.4 0.0544 Hypothalamus CTAAGCGGAC (2) GGCAGGACTC GTGGTGGTGG (4) 5.4 0.0054 E12.5 retina GTGGTGGTGG (4) 1.9 0.0019 E16.5 retina GTGGTGGTGG (4) 1.8 0.0018 E18.5 retina CGCCTCTCTC 1.8 0.0018 P0.5 retina GGCAGGACTC 3.9 0.0039 P2.5 retina CTAAGCGGAC (2) GGCAGGACTC 5.3 0.0053 P4.5 retina CGCCTCTCTC GAAATATCCC GGCAGGACTC 8 0.008 P6.5 retina GTGGTGGTGG (4) 1.7 0.0017 P10.5 crx- retina GTGGTGGTGG (4) 3.7 0.0037 P10.5 crx+ retina GGCAGGACTC GTGGTGGTGG (4) 3.8 0.0038 Adult retinal GTGGTGGTGG (4) 1.9 0.0019 ONL GTGGTGGTGG (4) 3.8 0.0038