Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.100399	AW743858	expressed sequence AW743858	18		107057
Mm.100399	Smad4	MAD homolog 4 (Drosophila)	18	18 48.0 cM	17128
Gene Ontology	anterior/posterior pattern formation | common-partner SMAD protein phosphorylation | DNA binding | gastrulation (sensu Mammalia) | intracellular | nucleus | organogenesis | positive regulation of transcription from Pol II promoter | protein binding | regulation of transcription from Pol II promoter | regulation of transcription, DNA-dependent | SMAD protein nuclear translocation | transcription factor activity | transcription factor complex
Human Homolog	SMAD4[SMAD, mothers against DPP homolog 4 (Drosophila)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 44 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCGAGGAGAG (2) GAGATGTTTT (3) TGTAGTTGGT (2) 11.4 0.0114 Cb medulloblastoma TATACTTTCT (2) TGTAGTTGGT (2) 4.6 0.0046 P8 GC+1d culture TATACTTTCT (2) TGTAGTTGGT (2) 4.5 0.0045 P8 GC+SHH+1d culture GAGATGTTTT (3) TATACTTTCT (2) TGTAGTTGGT (2) 8.2 0.0082 3T3 fibroblasts CCGAGGAGAG (2) 3.5 0.0035 E15 cortex CCGAGGAGAG (2) 4.9 0.0049 P1 cortex TATACTTTCT (2) 4.5 0.0045 E12.5 retina CCGAGGAGAG (2) GAGATGTTTT (3) TATGTTTTGA (2) TGTAGTTGGT (2) 7.6 0.0076 E14.5 retina CCGAGGAGAG (2) GAGATGTTTT (3) TATACTTTCT (2) TGTAGTTGGT (2) 10.9 0.0109 E16.5 retina TATACTTTCT (2) TATGTTTTGA (2) TGTAGTTGGT (2) 7.2 0.0072 E18.5 retina GAGATGTTTT (3) TATACTTTCT (2) TGTAGTTGGT (2) 14.5 0.0145 P0.5 retina CCGAGGAGAG (2) TATACTTTCT (2) TGTAGTTGGT (2) 9.9 0.0099 P2.5 retina CCGAGGAGAG (2) TATACTTTCT (2) TGTAGTTGGT (2) 5.4 0.0054 P4.5 retina CCGAGGAGAG (2) GAGATGTTTT (3) TATACTTTCT (2) TGTAGTTGGT (2) 23.9 0.0239 P6.5 retina TATACTTTCT (2) TATGTTTTGA (2) TGTAGTTGGT (2) 15 0.015 P10.5 crx- retina TGTAGTTGGT (2) 1.9 0.0019 P10.5 crx+ retina TGTAGTTGGT (2) 1.9 0.0019 Adult retinal TATACTTTCT (2) 1.9 0.0019 ONL TGTAGTTGGT (2) 1.9 0.0019