Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.100399	AW743858	expressed sequence AW743858	18		107057
Mm.100399	Smad4	MAD homolog 4 (Drosophila)	18	18 48.0 cM	17128
Gene Ontology	anterior/posterior pattern formation | common-partner SMAD protein phosphorylation | DNA binding | gastrulation (sensu Mammalia) | intracellular | nucleus | organogenesis | positive regulation of transcription from Pol II promoter | protein binding | regulation of transcription from Pol II promoter | regulation of transcription, DNA-dependent | SMAD protein nuclear translocation | transcription factor activity | transcription factor complex
Human Homolog	SMAD4[SMAD, mothers against DPP homolog 4 (Drosophila)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 92 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTAAAAAAAA (80) 13.1 0.0131 P8 Cb GC CCGAGGAGAG (2) 4.9 0.0049 P8 Cb GC TGTAGTTGGT (2) 4.9 0.0049 P8 Cb GC GGAAAGTCCT (7) 3.3 0.0033 P8 Cb GC GAGATGTTTT (5) 1.6 0.0016 Cb medulloblastoma TTAAAAAAAA (80) 53.2 0.0532 Cb medulloblastoma TATACTTTCT (2) 2.3 0.0023 Cb medulloblastoma TGTAGTTGGT (2) 2.3 0.0023 Cb medulloblastoma TGTGTTTGTG (12) 2.3 0.0023 P8 GC+1d culture TTAAAAAAAA (80) 28.5 0.0285 P8 GC+1d culture TGTGTTTGTG (12) 5.7 0.0057 P8 GC+1d culture TATACTTTCT (2) 3.4 0.0034 P8 GC+1d culture TGTGTCTGTG (16) 2.3 0.0023 P8 GC+1d culture TGTAGTTGGT (2) 1.1 0.0011 P8 GC+SHH+1d culture TTAAAAAAAA (80) 34 0.034 P8 GC+SHH+1d culture TATACTTTCT (2) 4.7 0.0047 P8 GC+SHH+1d culture TGTAGTTGGT (2) 2.3 0.0023 P8 GC+SHH+1d culture TGTGTTTGTG (12) 2.3 0.0023 P8 GC+SHH+1d culture GAGATGTTTT (5) 1.2 0.0012 3T3 fibroblasts TGTGTCTGTG (16) 7 0.007 3T3 fibroblasts CCGAGGAGAG (2) 3.5 0.0035 E15 cortex CCGAGGAGAG (2) 4.9 0.0049 E15 cortex GGAAAGTCCT (7) 4.9 0.0049 E15 cortex TTAAAAAAAA (80) 4.9 0.0049 P1 cortex TTAAAAAAAA (80) 13.6 0.0136 P1 cortex TGTGTTTGTG (12) 9.1 0.0091 P1 cortex GGAAAGTCCT (7) 4.5 0.0045 P1 cortex TATACTTTCT (2) 4.5 0.0045 Hypothalamus TTAAAAAAAA (80) 19.9 0.0199 Hypothalamus TGTGTCTGTG (16) 1.8 0.0018 E12.5 retina TTAAAAAAAA (80) 11.3 0.0113 E12.5 retina CCGAGGAGAG (2) 1.9 0.0019 E12.5 retina GAGATGTTTT (5) 1.9 0.0019 E12.5 retina GGAAAGTCCT (7) 1.9 0.0019 E12.5 retina TATGTTTTGA (3) 1.9 0.0019 E12.5 retina TGTAGTTGGT (2) 1.9 0.0019 E12.5 retina TGTGTCTGTG (16) 1.9 0.0019 E12.5 retina TGTGTTTGTG (12) 1.9 0.0019 E14.5 retina TTAAAAAAAA (80) 16.4 0.0164 E14.5 retina TATACTTTCT (2) 5.5 0.0055 E14.5 retina CCGAGGAGAG (2) 1.8 0.0018 E14.5 retina GAGATGTTTT (5) 1.8 0.0018 E14.5 retina TGTAGTTGGT (2) 1.8 0.0018 E16.5 retina TTAAAAAAAA (80) 16.3 0.0163 E16.5 retina TATACTTTCT (2) 3.6 0.0036 E16.5 retina TGTGTTTGTG (12) 3.6 0.0036 E16.5 retina TATGTTTTGA (3) 1.8 0.0018 E16.5 retina TGTAGTTGGT (2) 1.8 0.0018 E18.5 retina TTAAAAAAAA (80) 50.9 0.0509 E18.5 retina TATACTTTCT (2) 7.3 0.0073 E18.5 retina GAGATGTTTT (5) 3.6 0.0036 E18.5 retina TGTAGTTGGT (2) 3.6 0.0036 E18.5 retina TGTGTCTGTG (16) 1.8 0.0018 P0.5 retina TTAAAAAAAA (80) 17.7 0.0177 P0.5 retina TGTGTTTGTG (12) 7.9 0.0079 P0.5 retina TATACTTTCT (2) 5.9 0.0059 P0.5 retina CCGAGGAGAG (2) 2 0.002 P0.5 retina TGTAGTTGGT (2) 2 0.002 P2.5 retina TTAAAAAAAA (80) 40.5 0.0405 P2.5 retina TGTGTCTGTG (16) 5.3 0.0053 P2.5 retina TGTGTTTGTG (12) 3.5 0.0035 P2.5 retina CCGAGGAGAG (2) 1.8 0.0018 P2.5 retina TATACTTTCT (2) 1.8 0.0018 P2.5 retina TGTAGTTGGT (2) 1.8 0.0018 P4.5 retina TTAAAAAAAA (80) 47.6 0.0476 P4.5 retina TATACTTTCT (2) 13.9 0.0139 P4.5 retina GAGATGTTTT (5) 4 0.004 P4.5 retina TGTAGTTGGT (2) 4 0.004 P4.5 retina CCGAGGAGAG (2) 2 0.002 P4.5 retina TGTGTCTGTG (16) 2 0.002 P6.5 retina TTAAAAAAAA (80) 16.7 0.0167 P6.5 retina TATACTTTCT (2) 10 0.01 P6.5 retina TGTGTTTGTG (12) 8.3 0.0083 P6.5 retina TGTAGTTGGT (2) 3.3 0.0033 P6.5 retina TGTGTCTGTG (16) 3.3 0.0033 P6.5 retina TATGTTTTGA (3) 1.7 0.0017 P10.5 crx- retina TTAAAAAAAA (80) 13 0.013 P10.5 crx- retina TGTGTTTGTG (12) 3.7 0.0037 P10.5 crx- retina TGTAGTTGGT (2) 1.9 0.0019 P10.5 crx- retina TGTGTCTGTG (16) 1.9 0.0019 P10.5 crx+ retina TGTGTCTGTG (16) 30.8 0.0308 P10.5 crx+ retina TGTGTTTGTG (12) 5.8 0.0058 P10.5 crx+ retina TTAAAAAAAA (80) 5.8 0.0058 P10.5 crx+ retina TGTAGTTGGT (2) 1.9 0.0019 Adult retinal TGTGTCTGTG (16) 31.5 0.0315 Adult retinal TTAAAAAAAA (80) 7.4 0.0074 Adult retinal TATACTTTCT (2) 1.9 0.0019 Adult retinal TGTGTTTGTG (12) 1.9 0.0019 ONL TGTGTCTGTG (16) 11.5 0.0115 ONL TTAAAAAAAA (80) 7.7 0.0077 ONL TGTAGTTGGT (2) 1.9 0.0019 ONL TGTGTTTGTG (12) 1.9 0.0019