Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.10699	Vamp4	vesicle-associated membrane protein 4	1	1 85.0 cM	53330
Gene Ontology	biological_process unknown | integral to membrane | molecular_function unknown
Human Homolog	VAMP4[vesicle-associated membrane protein 4]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 98 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTGGCACACA (30) 6.5 0.0065 P8 Cb GC TGGGTGCCCT (3) 6.5 0.0065 P8 Cb GC GTGGCACACG (29) 4.9 0.0049 P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 Cb medulloblastoma GTGGCACACA (30) 11.6 0.0116 Cb medulloblastoma GCTTTGGCTG (5) 4.6 0.0046 Cb medulloblastoma TGGGTGCCCT (3) 4.6 0.0046 Cb medulloblastoma GTGGCACACG (29) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture GTGGCACACA (30) 13.7 0.0137 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture GTTTTTAAAA (11) 3.4 0.0034 P8 GC+1d culture TGGGTGCCCT (3) 3.4 0.0034 P8 GC+1d culture GCTTTGGCTG (5) 2.3 0.0023 P8 GC+1d culture GTGGCACACG (29) 1.1 0.0011 P8 GC+SHH+1d culture GTGGCACACG (29) 7 0.007 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture GCTTTGGCTG (5) 4.7 0.0047 P8 GC+SHH+1d culture TGGGTGCCCT (3) 3.5 0.0035 P8 GC+SHH+1d culture GTGGCACACA (30) 2.3 0.0023 P8 GC+SHH+1d culture GTTTTTAAAA (11) 2.3 0.0023 P8 GC+SHH+1d culture AAGGTGGGGG (8) 1.2 0.0012 3T3 fibroblasts GTGGCACACG (29) 35 0.035 3T3 fibroblasts GTGGCACACA (30) 14 0.014 3T3 fibroblasts GCTTTGGCTG (5) 3.5 0.0035 3T3 fibroblasts TGGGTGCCCT (3) 3.5 0.0035 E15 cortex GTGGCACACG (29) 69.3 0.0693 E15 cortex GTGGCACACA (30) 24.7 0.0247 E15 cortex GCTTTGGCTG (5) 4.9 0.0049 E15 cortex TGGGTGCCCT (3) 4.9 0.0049 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex GTGGCACACG (29) 9.1 0.0091 P1 cortex GTGGCACACA (30) 4.5 0.0045 P1 cortex GTTTTTAAAA (11) 4.5 0.0045 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus GTGGCACACA (30) 7.2 0.0072 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus GCTTTGGCTG (5) 3.6 0.0036 Hypothalamus GTTTTTAAAA (11) 1.8 0.0018 Hypothalamus TGGGTGCCCT (3) 1.8 0.0018 Hypothalamus TTTTAAAGCT (4) 1.8 0.0018 E12.5 retina GTGGCACACG (29) 13.1 0.0131 E12.5 retina GTGGCACACA (30) 11.3 0.0113 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina TGGGTGCCCT (3) 5.6 0.0056 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina GTGGCACACA (30) 18.2 0.0182 E14.5 retina GTGGCACACG (29) 18.2 0.0182 E14.5 retina GCTTTGGCTG (5) 3.6 0.0036 E16.5 retina GTGGCACACA (30) 9.1 0.0091 E16.5 retina TGGGTGCCCT (3) 9.1 0.0091 E16.5 retina GTGGCACACG (29) 5.4 0.0054 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina GTTTTTAAAA (11) 1.8 0.0018 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina GCTTTGGCTG (5) 7.3 0.0073 E18.5 retina GTGGCACACA (30) 5.5 0.0055 E18.5 retina GTGGCACACG (29) 3.6 0.0036 E18.5 retina ATCTCTGCTA 1.8 0.0018 E18.5 retina TGGGTGCCCT (3) 1.8 0.0018 P0.5 retina GTGGCACACA (30) 11.8 0.0118 P0.5 retina TGGGTGCCCT (3) 11.8 0.0118 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina GTGGCACACG (29) 5.9 0.0059 P0.5 retina GTTTTTAAAA (11) 3.9 0.0039 P0.5 retina GCTTTGGCTG (5) 2 0.002 P2.5 retina GTGGCACACA (30) 17.6 0.0176 P2.5 retina GTGGCACACG (29) 8.8 0.0088 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina AAGGTGGGGG (8) 1.8 0.0018 P4.5 retina GTGGCACACG (29) 13.9 0.0139 P4.5 retina GTGGCACACA (30) 11.9 0.0119 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina GTTTTTAAAA (11) 4 0.004 P4.5 retina TGGGTGCCCT (3) 4 0.004 P6.5 retina GTGGCACACA (30) 26.7 0.0267 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina GTGGCACACG (29) 6.7 0.0067 P6.5 retina TGGGTGCCCT (3) 1.7 0.0017 P6.5 retina TTTTAAAGCT (4) 1.7 0.0017 P10.5 crx- retina GTGGCACACA (30) 13 0.013 P10.5 crx- retina TGGGTGCCCT (3) 3.7 0.0037 P10.5 crx- retina TTTTAAAGCT (4) 3.7 0.0037 P10.5 crx- retina GCTTTGGCTG (5) 1.9 0.0019 P10.5 crx- retina GTGGCACACG (29) 1.9 0.0019 P10.5 crx+ retina GTGGCACACG (29) 9.6 0.0096 P10.5 crx+ retina GTGGCACACA (30) 7.7 0.0077 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina TGGGTGCCCT (3) 1.9 0.0019 Adult retinal GTGGCACACG (29) 13 0.013 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal GTGGCACACA (30) 5.6 0.0056 Adult retinal GCTTTGGCTG (5) 3.7 0.0037 Adult retinal TTTTAAAGCT (4) 1.9 0.0019 ONL GTGGCACACA (30) 24.9 0.0249 ONL GTGGCACACG (29) 7.7 0.0077 ONL TTTTTTTTTT (433) 3.8 0.0038 ONL AAGGTGGGGG (8) 1.9 0.0019