Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.10709
4930589O11Rik
RIKEN cDNA 4930589O11 gene
5
78214
Mm.10709
1110003E01Rik
RIKEN cDNA 1110003E01 gene
5
68552
Mm.10709
5430439C17Rik
RIKEN cDNA 5430439C17 gene
5
71403
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 101 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
ATTGATTAAT
(
5
)
11.4
0.0114
P8 Cb GC
ATTGATTAAA
(
6
)
6.5
0.0065
P8 Cb GC
TCAGCTGGGA (
5
)
3.3
0.0033
P8 Cb GC
GAATTCTCCA (
5
)
1.6
0.0016
P8 Cb GC
TGCCACCACC (
8
)
1.6
0.0016
Cb medulloblastoma
ATTGATTAAA
(
6
)
4.6
0.0046
Cb medulloblastoma
ATTGATTAAT
(
5
)
4.6
0.0046
Cb medulloblastoma
TTTATTTAAA
(
4
)
4.6
0.0046
Cb medulloblastoma
TCAGCTGGGA (
5
)
2.3
0.0023
Cb medulloblastoma
TGCCACCACC (
8
)
2.3
0.0023
Cb medulloblastoma
TTATTTAAAG (
9
)
2.3
0.0023
P8 GC+1d culture
ATTGATTAAT
(
5
)
6.8
0.0068
P8 GC+1d culture
TCAGCTGGGA (
5
)
4.6
0.0046
P8 GC+1d culture
ATTGATTAAA
(
6
)
3.4
0.0034
P8 GC+1d culture
CCAAACAAAT
(
5
)
2.3
0.0023
P8 GC+1d culture
AGCTTCTAGA
(
4
)
1.1
0.0011
P8 GC+SHH+1d culture
ATTGATTAAT
(
5
)
10.5
0.0105
P8 GC+SHH+1d culture
ATTGATTAAA
(
6
)
8.2
0.0082
P8 GC+SHH+1d culture
TGCCACCACC (
8
)
3.5
0.0035
P8 GC+SHH+1d culture
CCAAACAAAT
(
5
)
2.3
0.0023
P8 GC+SHH+1d culture
TTTATTTAAA
(
4
)
2.3
0.0023
P8 GC+SHH+1d culture
TTATTTAAAG (
9
)
1.2
0.0012
3T3 fibroblasts
GTCATAGCTG (
590
)
10.5
0.0105
E15 cortex
TGCCACCACC (
8
)
9.9
0.0099
E15 cortex
GAATTCTCCA (
5
)
4.9
0.0049
E15 cortex
GTCATAGCTG (
590
)
4.9
0.0049
P1 cortex
AGAGGCTCCA (
5
)
4.5
0.0045
P1 cortex
TTTATTTAAA
(
4
)
4.5
0.0045
Hypothalamus
ATTGATTAAA
(
6
)
7.2
0.0072
Hypothalamus
ATTGATTAAT
(
5
)
5.4
0.0054
Hypothalamus
TTTATTTAAA
(
4
)
5.4
0.0054
Hypothalamus
CCAAACAAAT
(
5
)
3.6
0.0036
Hypothalamus
TCAGCTGGGA (
5
)
3.6
0.0036
Hypothalamus
TGCCACCACC (
8
)
1.8
0.0018
Hypothalamus
TTATTTAAAG (
9
)
1.8
0.0018
E12.5 retina
ATTGATTAAA
(
6
)
3.8
0.0038
E12.5 retina
ATTGATTAAT
(
5
)
1.9
0.0019
E12.5 retina
CCAAACAAAT
(
5
)
1.9
0.0019
E12.5 retina
TCAGCTGGGA (
5
)
1.9
0.0019
E14.5 retina
ATTGATTAAA
(
6
)
12.8
0.0128
E14.5 retina
TGCCACCACC (
8
)
3.6
0.0036
E14.5 retina
TTATTTAAAG (
9
)
3.6
0.0036
E16.5 retina
ATTGATTAAA
(
6
)
7.2
0.0072
E16.5 retina
ATTGATTAAT
(
5
)
5.4
0.0054
E16.5 retina
AGCTTCTAGA
(
4
)
1.8
0.0018
E16.5 retina
TCAGCTGGGA (
5
)
1.8
0.0018
E16.5 retina
TTTATTTAAA
(
4
)
1.8
0.0018
E18.5 retina
ATTGATTAAA
(
6
)
21.8
0.0218
E18.5 retina
ATTGATTAAT
(
5
)
10.9
0.0109
E18.5 retina
TGCCACCACC (
8
)
1.8
0.0018
E18.5 retina
TTATTTAAAG (
9
)
1.8
0.0018
E18.5 retina
TTTATTTAAA
(
4
)
1.8
0.0018
P0.5 retina
ATTGATTAAA
(
6
)
5.9
0.0059
P0.5 retina
ATTGATTAAT
(
5
)
3.9
0.0039
P0.5 retina
GTCATAGCTG (
590
)
3.9
0.0039
P0.5 retina
TGCCACCACC (
8
)
3.9
0.0039
P0.5 retina
TCAGCTGGGA (
5
)
2
0.002
P2.5 retina
TCAGCTGGGA (
5
)
10.6
0.0106
P2.5 retina
ATTGATTAAA
(
6
)
8.8
0.0088
P2.5 retina
TGCCACCACC (
8
)
5.3
0.0053
P2.5 retina
ATTGATTAAT
(
5
)
3.5
0.0035
P2.5 retina
CTTCCACTTA
(
6
)
1.8
0.0018
P2.5 retina
GTCATAGCTG (
590
)
1.8
0.0018
P4.5 retina
ATTGATTAAA
(
6
)
5.9
0.0059
P4.5 retina
ATTGATTAAT
(
5
)
5.9
0.0059
P4.5 retina
TCAGCTGGGA (
5
)
5.9
0.0059
P4.5 retina
TTATTTAAAG (
9
)
4
0.004
P4.5 retina
GTCATAGCTG (
590
)
2
0.002
P4.5 retina
TTTATTTAAA
(
4
)
2
0.002
P6.5 retina
ATTGATTAAA
(
6
)
11.7
0.0117
P6.5 retina
CCAAACAAAT
(
5
)
6.7
0.0067
P6.5 retina
TCAGCTGGGA (
5
)
6.7
0.0067
P6.5 retina
ATTGATTAAT
(
5
)
5
0.005
P6.5 retina
GTCATAGCTG (
590
)
3.3
0.0033
P10.5 crx- retina
ATTGATTAAA
(
6
)
7.4
0.0074
P10.5 crx- retina
TCAGCTGGGA (
5
)
5.6
0.0056
P10.5 crx- retina
AGCTTCTAGA
(
4
)
3.7
0.0037
P10.5 crx- retina
GAATTCTCCA (
5
)
3.7
0.0037
P10.5 crx- retina
TGCCACCACC (
8
)
3.7
0.0037
P10.5 crx- retina
CCAAACAAAT
(
5
)
1.9
0.0019
P10.5 crx- retina
TTTATTTAAA
(
4
)
1.9
0.0019
P10.5 crx+ retina
ATTGATTAAA
(
6
)
7.7
0.0077
P10.5 crx+ retina
TGCCACCACC (
8
)
5.8
0.0058
P10.5 crx+ retina
TCAGCTGGGA (
5
)
3.8
0.0038
P10.5 crx+ retina
ATTGATTAAT
(
5
)
1.9
0.0019
P10.5 crx+ retina
CCAAACAAAT
(
5
)
1.9
0.0019
P10.5 crx+ retina
CTTCCACTTA
(
6
)
1.9
0.0019
Adult retinal
TGCCACCACC (
8
)
7.4
0.0074
Adult retinal
GAATTCTCCA (
5
)
3.7
0.0037
Adult retinal
TCAGCTGGGA (
5
)
3.7
0.0037
Adult retinal
ATTGATTAAA
(
6
)
1.9
0.0019
Adult retinal
CCAAACAAAT
(
5
)
1.9
0.0019
Adult retinal
GTCATAGCTG (
590
)
1.9
0.0019
Adult retinal
TTATTTAAAG (
9
)
1.9
0.0019
ONL
TGCCACCACC (
8
)
9.6
0.0096
ONL
GAATTCTCCA (
5
)
5.7
0.0057
ONL
GTCATAGCTG (
590
)
5.7
0.0057
ONL
AGAGGCTCCA (
5
)
3.8
0.0038
ONL
ATTGATTAAA
(
6
)
3.8
0.0038
ONL
CTTCCACTTA
(
6
)
1.9
0.0019
ONL
TCAGCTGGGA (
5
)
1.9
0.0019
