Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.119162	A130072A22Rik	RIKEN cDNA A130072A22 gene	8		320542
Mm.119162	Elavl1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	8	8 1.0 cM	15568
Mm.119162	W91709	expressed sequence W91709	8		97501
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 128 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CATCCTTGAT (4) 52.2 0.0522 P8 Cb GC GTGACTCACA (25) 14.7 0.0147 P8 Cb GC GGTTTGTTTT (7) 4.9 0.0049 P8 Cb GC CAACTTCCCG (3) 1.6 0.0016 P8 Cb GC CCTGAAGATG (10) 1.6 0.0016 P8 Cb GC TAATGGAAAC (4) 1.6 0.0016 P8 Cb GC TTTCAAAATG (9) 1.6 0.0016 Cb medulloblastoma CATCCTTGAT (4) 71.7 0.0717 Cb medulloblastoma GTGACTCACA (25) 25.4 0.0254 Cb medulloblastoma GGTTTGTTTT (7) 4.6 0.0046 Cb medulloblastoma CAAAAGGAAA (8) 2.3 0.0023 Cb medulloblastoma TAATGGAAAC (4) 2.3 0.0023 Cb medulloblastoma TGTTTGTGTG (10) 2.3 0.0023 P8 GC+1d culture CATCCTTGAT (4) 105 0.105 P8 GC+1d culture GTGACTCACA (25) 14.8 0.0148 P8 GC+1d culture GGTTTGTTTT (7) 5.7 0.0057 P8 GC+1d culture CAACTTCCCG (3) 3.4 0.0034 P8 GC+1d culture CTTTTTTTTT (25) 3.4 0.0034 P8 GC+1d culture TTTTTTTTTA (7) 3.4 0.0034 P8 GC+1d culture ACACAGAAGT (4) 1.1 0.0011 P8 GC+1d culture CCTGAAGATG (10) 1.1 0.0011 P8 GC+1d culture TAATGGAAAC (4) 1.1 0.0011 P8 GC+1d culture TTTCAAAATG (9) 1.1 0.0011 P8 GC+SHH+1d culture CATCCTTGAT (4) 73.8 0.0738 P8 GC+SHH+1d culture GTGACTCACA (25) 16.4 0.0164 P8 GC+SHH+1d culture GGTTTGTTTT (7) 4.7 0.0047 P8 GC+SHH+1d culture CCTGAAGATG (10) 2.3 0.0023 P8 GC+SHH+1d culture TAATGGAAAC (4) 2.3 0.0023 P8 GC+SHH+1d culture CAAAAGGAAA (8) 1.2 0.0012 P8 GC+SHH+1d culture CAACTTCCCG (3) 1.2 0.0012 P8 GC+SHH+1d culture CTGTATCAGC (5) 1.2 0.0012 P8 GC+SHH+1d culture TTTCAAAATG (9) 1.2 0.0012 3T3 fibroblasts GTGACTCACA (25) 35 0.035 3T3 fibroblasts CCTGAAGATG (10) 3.5 0.0035 E15 cortex CATCCTTGAT (4) 49.5 0.0495 E15 cortex GTGACTCACA (25) 19.8 0.0198 E15 cortex GGTTTGTTTT (7) 9.9 0.0099 E15 cortex CTTTTTTTTT (25) 4.9 0.0049 P1 cortex CATCCTTGAT (4) 36.4 0.0364 P1 cortex GTGACTCACA (25) 13.6 0.0136 P1 cortex CCTGAAGATG (10) 4.5 0.0045 P1 cortex CTTTTTTTTC (8) 4.5 0.0045 P1 cortex TTTTTTTTTA (7) 4.5 0.0045 Hypothalamus CATCCTTGAT (4) 32.6 0.0326 Hypothalamus GTGACTCACA (25) 21.7 0.0217 Hypothalamus CCTGAAGATG (10) 1.8 0.0018 Hypothalamus CTGTATCAGC (5) 1.8 0.0018 Hypothalamus TGTTTGTGTG (10) 1.8 0.0018 Hypothalamus TTTCAAAATG (9) 1.8 0.0018 E12.5 retina CATCCTTGAT (4) 240.3 0.2403 E12.5 retina GTGACTCACA (25) 35.7 0.0357 E12.5 retina ACACAGAAGT (4) 3.8 0.0038 E12.5 retina CAACTTCCCG (3) 1.9 0.0019 E12.5 retina CCTGAAGATG (10) 1.9 0.0019 E12.5 retina CTTTTTTTTC (8) 1.9 0.0019 E12.5 retina TAAAAACAAA (5) 1.9 0.0019 E12.5 retina TAATGGAAAC (4) 1.9 0.0019 E14.5 retina CATCCTTGAT (4) 45.5 0.0455 E14.5 retina GTGACTCACA (25) 45.5 0.0455 E14.5 retina CAACTTCCCG (3) 1.8 0.0018 E14.5 retina CCTGAAGATG (10) 1.8 0.0018 E14.5 retina CTTTTTTTTT (25) 1.8 0.0018 E14.5 retina GTGGCCACAC (4) 1.8 0.0018 E14.5 retina TGTTTGTGTG (10) 1.8 0.0018 E16.5 retina CATCCTTGAT (4) 97.8 0.0978 E16.5 retina GTGACTCACA (25) 29 0.029 E16.5 retina CAACTTCCCG (3) 7.2 0.0072 E16.5 retina CTTTTTTTTC (8) 1.8 0.0018 E16.5 retina TAATGGAAAC (4) 1.8 0.0018 E16.5 retina TTTCAAAATG (9) 1.8 0.0018 E18.5 retina CATCCTTGAT (4) 165.5 0.1655 E18.5 retina GTGACTCACA (25) 27.3 0.0273 E18.5 retina GGTTTGTTTT (7) 5.5 0.0055 E18.5 retina CAACTTCCCG (3) 1.8 0.0018 P0.5 retina CATCCTTGAT (4) 253.2 0.2532 P0.5 retina GTGACTCACA (25) 29.4 0.0294 P0.5 retina CCTGAAGATG (10) 2 0.002 P0.5 retina GGTTTGTTTT (7) 2 0.002 P2.5 retina CATCCTTGAT (4) 337.9 0.3379 P2.5 retina GTGACTCACA (25) 24.6 0.0246 P2.5 retina GGTTTGTTTT (7) 3.5 0.0035 P2.5 retina CTGTATCAGC (5) 1.8 0.0018 P2.5 retina GTGGCCACAC (4) 1.8 0.0018 P2.5 retina TAATGGAAAC (4) 1.8 0.0018 P2.5 retina TGTTTGTGTG (10) 1.8 0.0018 P2.5 retina TTTCAAAATG (9) 1.8 0.0018 P2.5 retina TTTTTTTTTA (7) 1.8 0.0018 P4.5 retina CATCCTTGAT (4) 188.2 0.1882 P4.5 retina GTGACTCACA (25) 27.7 0.0277 P4.5 retina TTTCAAAATG (9) 4 0.004 P4.5 retina ACACAGAAGT (4) 2 0.002 P4.5 retina CAAAAGGAAA (8) 2 0.002 P4.5 retina GGTTTGTTTT (7) 2 0.002 P4.5 retina TAATGGAAAC (4) 2 0.002 P4.5 retina TGTTTGTGTG (10) 2 0.002 P6.5 retina CATCCTTGAT (4) 210.1 0.2101 P6.5 retina GTGACTCACA (25) 26.7 0.0267 P6.5 retina GGTTTGTTTT (7) 5 0.005 P6.5 retina TTTCAAAATG (9) 3.3 0.0033 P6.5 retina CAAAAGGAAA (8) 1.7 0.0017 P6.5 retina CAACTTCCCG (3) 1.7 0.0017 P6.5 retina CCTGAAGATG (10) 1.7 0.0017 P6.5 retina TAAAAACAAA (5) 1.7 0.0017 P6.5 retina TAATGGAAAC (4) 1.7 0.0017 P6.5 retina TGTTTGTGTG (10) 1.7 0.0017 P10.5 crx- retina CATCCTTGAT (4) 111.5 0.1115 P10.5 crx- retina GTGACTCACA (25) 26 0.026 P10.5 crx- retina CCTGAAGATG (10) 5.6 0.0056 P10.5 crx- retina CAACTTCCCG (3) 1.9 0.0019 P10.5 crx- retina CTTTTTTTTT (25) 1.9 0.0019 P10.5 crx- retina GGTTTGTTTT (7) 1.9 0.0019 P10.5 crx- retina TAAAAACAAA (5) 1.9 0.0019 P10.5 crx+ retina CATCCTTGAT (4) 103.8 0.1038 P10.5 crx+ retina GTGACTCACA (25) 30.8 0.0308 P10.5 crx+ retina CAACTTCCCG (3) 3.8 0.0038 P10.5 crx+ retina ACACAGAAGT (4) 1.9 0.0019 P10.5 crx+ retina GTGGCCACAC (4) 1.9 0.0019 P10.5 crx+ retina TTTCAAAATG (9) 1.9 0.0019 Adult retinal CATCCTTGAT (4) 124.1 0.1241 Adult retinal GTGACTCACA (25) 33.3 0.0333 Adult retinal CCTGAAGATG (10) 3.7 0.0037 ONL CATCCTTGAT (4) 74.7 0.0747 ONL GTGACTCACA (25) 34.5 0.0345 ONL CCTGAAGATG (10) 3.8 0.0038 ONL ACACAGAAGT (4) 1.9 0.0019 ONL GGTTTGTTTT (7) 1.9 0.0019 ONL TAAAAACAAA (5) 1.9 0.0019 ONL TAATGGAAAC (4) 1.9 0.0019