Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.126043	Bat1a	HLA-B-associated transcript 1A	17	17 19.12 cM	53817
Gene Ontology	ATP binding | ATP dependent helicase activity | ATP dependent RNA helicase activity | ATPase activity | helicase activity | nucleic acid binding | nucleus | RNA binding
Human Homolog	BAT1[HLA-B associated transcript 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 36 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCAGAGGACT (2) 8.2 0.0082 P8 Cb GC GCAGCTGTGG (3) 1.6 0.0016 P8 Cb GC GGGTGTATTG 1.6 0.0016 P8 Cb GC TCAGTGGCAG (3) 1.6 0.0016 Cb medulloblastoma AGAACAGGTC 2.3 0.0023 P8 GC+1d culture CCAGAGGACT (2) 12.6 0.0126 P8 GC+1d culture AGAACAGGTC 1.1 0.0011 P8 GC+SHH+1d culture CCAGAGGACT (2) 18.7 0.0187 P8 GC+SHH+1d culture AATCGGCCCT 1.2 0.0012 3T3 fibroblasts CCAGAGGACT (2) 17.5 0.0175 E15 cortex CCAGAGGACT (2) 29.7 0.0297 P1 cortex CCAGAGGACT (2) 27.3 0.0273 P1 cortex AGAAGCAGGT (2) 9.1 0.0091 Hypothalamus CCAGAGGACT (2) 5.4 0.0054 Hypothalamus AATCGGCCCT 1.8 0.0018 E12.5 retina CCAGAGGACT (2) 16.9 0.0169 E14.5 retina CCAGAGGACT (2) 10.9 0.0109 E14.5 retina AGAACAGGTC 1.8 0.0018 E14.5 retina GCAGCTGTGG (3) 1.8 0.0018 E16.5 retina CCAGAGGACT (2) 25.4 0.0254 E16.5 retina GGGTGTATTG 1.8 0.0018 E18.5 retina CCAGAGGACT (2) 5.5 0.0055 P0.5 retina CCAGAGGACT (2) 58.9 0.0589 P0.5 retina AATCGGCCCT 2 0.002 P0.5 retina AGAAGCAGGT (2) 2 0.002 P0.5 retina GCAGCTGTGG (3) 2 0.002 P2.5 retina CCAGAGGACT (2) 10.6 0.0106 P2.5 retina AGAACAGGTC 1.8 0.0018 P2.5 retina TCAGTGGCAG (3) 1.8 0.0018 P4.5 retina CCAGAGGACT (2) 13.9 0.0139 P6.5 retina CCAGAGGACT (2) 10 0.01 P10.5 crx- retina CCAGAGGACT (2) 13 0.013 P10.5 crx- retina AGAACAGGTC 1.9 0.0019 Adult retinal CCAGAGGACT (2) 20.4 0.0204 Adult retinal AGAACAGGTC 1.9 0.0019 ONL CCAGAGGACT (2) 5.7 0.0057