Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.126043	Bat1a	HLA-B-associated transcript 1A	17	17 19.12 cM	53817
Gene Ontology	ATP binding | ATP dependent helicase activity | ATP dependent RNA helicase activity | ATPase activity | helicase activity | nucleic acid binding | nucleus | RNA binding
Human Homolog	BAT1[HLA-B associated transcript 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 80 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AATCGGCCTT CCAGAGGACT (2) CCCCTGTGTA GAGGACTCCG GCAAGATGAA GCAGCTGTGG (3) GGGTGTATTG TCAGTGGCAG (3) 21.1 0.0211 Cb medulloblastoma AATCGGCCTT AGAACAGGTC CCCCTGTGTA 6.9 0.0069 P8 GC+1d culture AATCGGCCTT AGAACAGGTC CCAGAGGACT (2) CCCAGGATTG CCCCTGTGTA CCCTGTATCT (2) GCAAGATGAA 22.8 0.0228 P8 GC+SHH+1d culture AATCGGCCCT CCAGAGGACT (2) CCCCTGTGTA 22.2 0.0222 3T3 fibroblasts AATCGGCCTT CCAGAGGACT (2) CCCTGTATCT (2) 31.5 0.0315 E15 cortex CCAGAGGACT (2) 29.7 0.0297 P1 cortex AGAAGCAGGT (2) CCAGAGGACT (2) CCCCTGTGTA 40.9 0.0409 Hypothalamus AATCGGCCCT CCAGAGGACT (2) CCCAGGATTG CTGGCCAAAA 12.6 0.0126 E12.5 retina AATCGGCCTT CCAGAGGACT (2) CCCCTGTGTA 22.6 0.0226 E14.5 retina AATCGGCCTT AGAACAGGTC CCAGAGGACT (2) GCAAGATGAA GCAGCTGTGG (3) 19.9 0.0199 E16.5 retina AATCGGCCTT CCAGAGGACT (2) CCCCTGTGTA GCAAGATGAA GGGTGTATTG 32.6 0.0326 E18.5 retina CCAGAGGACT (2) CTGGCCAAAA 7.3 0.0073 P0.5 retina AATCGGCCCT AATCGGCCTT AGAAGCAGGT (2) CCAGAGGACT (2) CCCCTGTGTA CCCTGTATCT (2) GCAGCTGTGG (3) 74.8 0.0748 P2.5 retina AGAACAGGTC CCAGAGGACT (2) CCCCTGTGTA CTGGCCAAAA TCAGTGGCAG (3) 21.2 0.0212 P4.5 retina AATCGGCCTT CCAGAGGACT (2) 15.9 0.0159 P6.5 retina AATCGGCCTT CCAGAGGACT (2) CCCCTGTGTA CCCTGTATCT (2) 18.4 0.0184 P10.5 crx- retina AATCGGCCTT AGAACAGGTC CCAGAGGACT (2) CCCCTGTGTA CCCTGTATCT (2) TATACTTGAA 29.9 0.0299 P10.5 crx+ retina CCCCTGTGTA 3.8 0.0038 Adult retinal AATCGGCCTT AGAACAGGTC CCAGAGGACT (2) CCCCTGTGTA GAGGACTCCG 35.3 0.0353 ONL AATCGGCCTT CCAGAGGACT (2) GAGGACTCCG 13.3 0.0133