Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.12677
Atp5c1
ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
2
11949
Mm.12677
D13Mgi7
DNA Segment, Chr 13, Mouse Genome Informatics 7
13
97882
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 121 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
AAAAAAAAAA (
658
)
203.9
0.2039
P8 Cb GC
GACAACGCCA
(
3
)
27.7
0.0277
P8 Cb GC
AGAAAAAAAA (
47
)
17.9
0.0179
P8 Cb GC
AGACACTTCT (
5
)
3.3
0.0033
P8 Cb GC
GGGAAAAAAA (
36
)
1.6
0.0016
Cb medulloblastoma
AAAAAAAAAA (
658
)
797.8
0.7978
Cb medulloblastoma
GGGAAAAAAA (
36
)
92.5
0.0925
Cb medulloblastoma
AGAAAAAAAA (
47
)
53.2
0.0532
Cb medulloblastoma
GACAACGCCA
(
3
)
23.1
0.0231
Cb medulloblastoma
ACTGACTCAC (
3
)
2.3
0.0023
Cb medulloblastoma
GCAACTCTGA
(
4
)
2.3
0.0023
P8 GC+1d culture
AAAAAAAAAA (
658
)
204.3
0.2043
P8 GC+1d culture
GACAACGCCA
(
3
)
19.4
0.0194
P8 GC+1d culture
AGAAAAAAAA (
47
)
8
0.008
P8 GC+1d culture
AGACACTTCT (
5
)
8
0.008
P8 GC+1d culture
GTCTCAGCAG
(
3
)
3.4
0.0034
P8 GC+1d culture
GACAGCCAGA (
4
)
1.1
0.0011
P8 GC+1d culture
GGGAAAAAAA (
36
)
1.1
0.0011
P8 GC+SHH+1d culture
AAAAAAAAAA (
658
)
278.7
0.2787
P8 GC+SHH+1d culture
AGAAAAAAAA (
47
)
14.1
0.0141
P8 GC+SHH+1d culture
GACAACGCCA
(
3
)
14.1
0.0141
P8 GC+SHH+1d culture
AGACACTTCT (
5
)
1.2
0.0012
P8 GC+SHH+1d culture
GACAGCCAGA (
4
)
1.2
0.0012
P8 GC+SHH+1d culture
GGGAAAAAAA (
36
)
1.2
0.0012
P8 GC+SHH+1d culture
GTCTCAGCAG
(
3
)
1.2
0.0012
3T3 fibroblasts
GACAACGCCA
(
3
)
56.1
0.0561
3T3 fibroblasts
AAAAAAAAAA (
658
)
28
0.028
3T3 fibroblasts
ACTGACTCAC (
3
)
3.5
0.0035
3T3 fibroblasts
AGAAAAAAAA (
47
)
3.5
0.0035
E15 cortex
AAAAAAAAAA (
658
)
212.8
0.2128
E15 cortex
GACAACGCCA
(
3
)
54.4
0.0544
E15 cortex
AGAAAAAAAA (
47
)
14.8
0.0148
E15 cortex
AGACACTTCT (
5
)
9.9
0.0099
E15 cortex
ACTGACTCAC (
3
)
4.9
0.0049
E15 cortex
AGCATCTATG
(
4
)
4.9
0.0049
P1 cortex
AAAAAAAAAA (
658
)
245.4
0.2454
P1 cortex
GACAACGCCA
(
3
)
13.6
0.0136
P1 cortex
AGAAAAAAAA (
47
)
9.1
0.0091
P1 cortex
GGGAAAAAAA (
36
)
4.5
0.0045
Hypothalamus
AAAAAAAAAA (
658
)
123.2
0.1232
Hypothalamus
GGGAAAAAAA (
36
)
41.7
0.0417
Hypothalamus
AGAAAAAAAA (
47
)
32.6
0.0326
Hypothalamus
GACAACGCCA
(
3
)
10.9
0.0109
Hypothalamus
AGACACTTCT (
5
)
3.6
0.0036
Hypothalamus
GCAACTCTGA
(
4
)
3.6
0.0036
Hypothalamus
ACTGACTCAC (
3
)
1.8
0.0018
Hypothalamus
GTCTCAGCAG
(
3
)
1.8
0.0018
E12.5 retina
AAAAAAAAAA (
658
)
138.9
0.1389
E12.5 retina
AGAAAAAAAA (
47
)
20.7
0.0207
E12.5 retina
GACAACGCCA
(
3
)
9.4
0.0094
E14.5 retina
AAAAAAAAAA (
658
)
94.7
0.0947
E14.5 retina
AGAAAAAAAA (
47
)
20
0.02
E14.5 retina
GACAACGCCA
(
3
)
16.4
0.0164
E14.5 retina
GTCTCAGCAG
(
3
)
12.8
0.0128
E14.5 retina
GGGAAAAAAA (
36
)
1.8
0.0018
E14.5 retina
GTTCTCGGGC
(
3
)
1.8
0.0018
E16.5 retina
AAAAAAAAAA (
658
)
43.5
0.0435
E16.5 retina
AGAAAAAAAA (
47
)
10.9
0.0109
E16.5 retina
AGACACTTCT (
5
)
7.2
0.0072
E16.5 retina
GACAACGCCA
(
3
)
7.2
0.0072
E16.5 retina
AGCATCTATG
(
4
)
5.4
0.0054
E16.5 retina
ACTGACTCAC (
3
)
3.6
0.0036
E16.5 retina
GGGAAAAAAA (
36
)
3.6
0.0036
E16.5 retina
GTCTCAGCAG
(
3
)
3.6
0.0036
E18.5 retina
AAAAAAAAAA (
658
)
374.7
0.3747
E18.5 retina
AGAAAAAAAA (
47
)
29.1
0.0291
E18.5 retina
AGACACTTCT (
5
)
3.6
0.0036
E18.5 retina
GACAACGCCA
(
3
)
3.6
0.0036
E18.5 retina
GGGAAAAAAA (
36
)
1.8
0.0018
E18.5 retina
GTCTCAGCAG
(
3
)
1.8
0.0018
P0.5 retina
AAAAAAAAAA (
658
)
117.8
0.1178
P0.5 retina
GACAACGCCA
(
3
)
29.4
0.0294
P0.5 retina
AGAAAAAAAA (
47
)
13.7
0.0137
P0.5 retina
GGGAAAAAAA (
36
)
3.9
0.0039
P0.5 retina
GTCTCAGCAG
(
3
)
3.9
0.0039
P0.5 retina
AGACACTTCT (
5
)
2
0.002
P0.5 retina
GCAACTCTGA
(
4
)
2
0.002
P0.5 retina
GTTCTCGGGC
(
3
)
2
0.002
P2.5 retina
AAAAAAAAAA (
658
)
329.1
0.3291
P2.5 retina
AGAAAAAAAA (
47
)
17.6
0.0176
P2.5 retina
GACAACGCCA
(
3
)
12.3
0.0123
P2.5 retina
GGGAAAAAAA (
36
)
7
0.007
P2.5 retina
AGACACTTCT (
5
)
3.5
0.0035
P2.5 retina
GTCTCAGCAG
(
3
)
3.5
0.0035
P4.5 retina
AAAAAAAAAA (
658
)
283.3
0.2833
P4.5 retina
AGAAAAAAAA (
47
)
31.7
0.0317
P4.5 retina
GGGAAAAAAA (
36
)
9.9
0.0099
P4.5 retina
GACAACGCCA
(
3
)
5.9
0.0059
P4.5 retina
AGACACTTCT (
5
)
4
0.004
P6.5 retina
AAAAAAAAAA (
658
)
266.8
0.2668
P6.5 retina
GACAACGCCA
(
3
)
28.3
0.0283
P6.5 retina
GGGAAAAAAA (
36
)
20
0.02
P6.5 retina
AGAAAAAAAA (
47
)
13.3
0.0133
P6.5 retina
AGACACTTCT (
5
)
1.7
0.0017
P6.5 retina
GCAACTCTGA
(
4
)
1.7
0.0017
P10.5 crx- retina
GACAACGCCA
(
3
)
65
0.065
P10.5 crx- retina
AAAAAAAAAA (
658
)
44.6
0.0446
P10.5 crx- retina
GGGAAAAAAA (
36
)
11.1
0.0111
P10.5 crx- retina
ACTGACTCAC (
3
)
7.4
0.0074
P10.5 crx- retina
AGAAAAAAAA (
47
)
7.4
0.0074
P10.5 crx- retina
AGACACTTCT (
5
)
7.4
0.0074
P10.5 crx- retina
GCAACTCTGA
(
4
)
7.4
0.0074
P10.5 crx- retina
GTCTCAGCAG
(
3
)
1.9
0.0019
P10.5 crx+ retina
AAAAAAAAAA (
658
)
96.1
0.0961
P10.5 crx+ retina
GACAACGCCA
(
3
)
38.4
0.0384
P10.5 crx+ retina
GGGAAAAAAA (
36
)
23.1
0.0231
P10.5 crx+ retina
AGAAAAAAAA (
47
)
5.8
0.0058
P10.5 crx+ retina
AGACACTTCT (
5
)
5.8
0.0058
P10.5 crx+ retina
GACAGCCAGA (
4
)
1.9
0.0019
P10.5 crx+ retina
GTCTCAGCAG
(
3
)
1.9
0.0019
Adult retinal
AAAAAAAAAA (
658
)
57.4
0.0574
Adult retinal
GGGAAAAAAA (
36
)
35.2
0.0352
Adult retinal
GACAACGCCA
(
3
)
25.9
0.0259
Adult retinal
AGAAAAAAAA (
47
)
5.6
0.0056
Adult retinal
GTTCTCGGGC
(
3
)
3.7
0.0037
Adult retinal
GCAACTCTGA
(
4
)
1.9
0.0019
ONL
AAAAAAAAAA (
658
)
103.4
0.1034
ONL
GGGAAAAAAA (
36
)
30.6
0.0306
ONL
AGAAAAAAAA (
47
)
19.2
0.0192
ONL
GACAACGCCA
(
3
)
17.2
0.0172
ONL
AGACACTTCT (
5
)
3.8
0.0038
