Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.150856
Hmg20a
high mobility group 20A
9
66867
Mm.150856
5830432F11Rik
RIKEN cDNA 5830432F11 gene
9
76029
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 119 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CAGGTGAGCG (
5
)
50.6
0.0506
P8 Cb GC
TGTTTGGAGC
(
6
)
6.5
0.0065
P8 Cb GC
TCTCAAAAAA
(
22
)
4.9
0.0049
P8 Cb GC
GAAGACCTTT (
6
)
1.6
0.0016
P8 Cb GC
TGCTGCTGAC (
5
)
1.6
0.0016
Cb medulloblastoma
CAGGTGAGCG (
5
)
9.2
0.0092
Cb medulloblastoma
TCTCAAAAAA
(
22
)
9.2
0.0092
Cb medulloblastoma
TGTTTGGAGC
(
6
)
6.9
0.0069
Cb medulloblastoma
GAAGACCTTT (
6
)
2.3
0.0023
Cb medulloblastoma
GACCAGAAAA
(
2
)
2.3
0.0023
P8 GC+1d culture
CAGGTGAGCG (
5
)
43.4
0.0434
P8 GC+1d culture
TGTTTGGAGC
(
6
)
6.8
0.0068
P8 GC+1d culture
TCTCAAAAAA
(
22
)
3.4
0.0034
P8 GC+1d culture
ATCCTGGAGA (
4
)
2.3
0.0023
P8 GC+1d culture
GACCAGAAAA
(
2
)
1.1
0.0011
P8 GC+1d culture
GAGGAAGAGG
(
8
)
1.1
0.0011
P8 GC+1d culture
GGGGGTGGCT
(
2
)
1.1
0.0011
P8 GC+1d culture
TGTTAGGCTT
(
2
)
1.1
0.0011
P8 GC+SHH+1d culture
CAGGTGAGCG (
5
)
42.2
0.0422
P8 GC+SHH+1d culture
TGTTTGGAGC
(
6
)
8.2
0.0082
P8 GC+SHH+1d culture
TCTCAAAAAA
(
22
)
3.5
0.0035
P8 GC+SHH+1d culture
ATCCTGGAGA (
4
)
1.2
0.0012
P8 GC+SHH+1d culture
GACCAGAAAA
(
2
)
1.2
0.0012
P8 GC+SHH+1d culture
GTGGACTCTG
(
4
)
1.2
0.0012
3T3 fibroblasts
CAGGTGAGCG (
5
)
42.1
0.0421
E15 cortex
CAGGTGAGCG (
5
)
24.7
0.0247
E15 cortex
TGTTTGGAGC
(
6
)
14.8
0.0148
E15 cortex
GAGGAAGAGG
(
8
)
9.9
0.0099
P1 cortex
AGGGCTGTGT (
7
)
4.5
0.0045
P1 cortex
CAGGGTGAGC
(
3
)
4.5
0.0045
P1 cortex
CAGGTGAGCG (
5
)
4.5
0.0045
P1 cortex
GAGGAAGAGG
(
8
)
4.5
0.0045
Hypothalamus
CAGGTGAGCG (
5
)
9.1
0.0091
Hypothalamus
TCTCAAAAAA
(
22
)
5.4
0.0054
Hypothalamus
CAGGGTGAGC
(
3
)
3.6
0.0036
Hypothalamus
TGTTTGGAGC
(
6
)
3.6
0.0036
Hypothalamus
CAGACCAGCA (
7
)
1.8
0.0018
Hypothalamus
GTGGACTCTG
(
4
)
1.8
0.0018
Hypothalamus
TGCTGCTGAC (
5
)
1.8
0.0018
E12.5 retina
CAGGTGAGCG (
5
)
35.7
0.0357
E12.5 retina
TGTTTGGAGC
(
6
)
7.5
0.0075
E12.5 retina
GAGGAAGAGG
(
8
)
3.8
0.0038
E12.5 retina
ATCCTGGAGA (
4
)
1.9
0.0019
E12.5 retina
CAGGGTGAGC
(
3
)
1.9
0.0019
E12.5 retina
GAAGACCTTT (
6
)
1.9
0.0019
E14.5 retina
CAGGTGAGCG (
5
)
18.2
0.0182
E14.5 retina
TGTTTGGAGC
(
6
)
5.5
0.0055
E14.5 retina
TCTCAAAAAA
(
22
)
3.6
0.0036
E14.5 retina
ATCCTGGAGA (
4
)
1.8
0.0018
E14.5 retina
GAAGACCTTT (
6
)
1.8
0.0018
E14.5 retina
GAGGAAGAGG
(
8
)
1.8
0.0018
E16.5 retina
CAGGTGAGCG (
5
)
21.7
0.0217
E16.5 retina
TCTCAAAAAA
(
22
)
3.6
0.0036
E16.5 retina
TGTTTGGAGC
(
6
)
3.6
0.0036
E16.5 retina
ATCCTGGAGA (
4
)
1.8
0.0018
E16.5 retina
GTGGACTCTG
(
4
)
1.8
0.0018
E16.5 retina
TACACAATAT
(
2
)
1.8
0.0018
E18.5 retina
CAGGTGAGCG (
5
)
12.7
0.0127
E18.5 retina
TCTCAAAAAA
(
22
)
5.5
0.0055
E18.5 retina
CAGACCAGCA (
7
)
3.6
0.0036
E18.5 retina
GAAGACCTTT (
6
)
3.6
0.0036
E18.5 retina
TGTTTGGAGC
(
6
)
3.6
0.0036
E18.5 retina
GACCAGAAAA
(
2
)
1.8
0.0018
P0.5 retina
CAGGTGAGCG (
5
)
47.1
0.0471
P0.5 retina
TGTTTGGAGC
(
6
)
7.9
0.0079
P0.5 retina
AGGGCTGTGT (
7
)
2
0.002
P0.5 retina
ATCCTGGAGA (
4
)
2
0.002
P0.5 retina
CAGGGTGAGC
(
3
)
2
0.002
P0.5 retina
GAAGACCTTT (
6
)
2
0.002
P0.5 retina
GAGGAAGAGG
(
8
)
2
0.002
P0.5 retina
TGTTAGGCTT
(
2
)
2
0.002
P2.5 retina
CAGGTGAGCG (
5
)
14.1
0.0141
P2.5 retina
GAAGACCTTT (
6
)
5.3
0.0053
P2.5 retina
ATCCTGGAGA (
4
)
3.5
0.0035
P2.5 retina
TGTTTGGAGC
(
6
)
3.5
0.0035
P2.5 retina
AGGGCTGTGT (
7
)
1.8
0.0018
P2.5 retina
CAGGGTGAGC
(
3
)
1.8
0.0018
P2.5 retina
GGGGGTGGCT
(
2
)
1.8
0.0018
P2.5 retina
TACACAATAT
(
2
)
1.8
0.0018
P2.5 retina
TCTCAAAAAA
(
22
)
1.8
0.0018
P4.5 retina
CAGGTGAGCG (
5
)
13.9
0.0139
P4.5 retina
TGTTTGGAGC
(
6
)
4
0.004
P4.5 retina
AGGGCTGTGT (
7
)
2
0.002
P4.5 retina
CAGGGTGAGC
(
3
)
2
0.002
P4.5 retina
GAAGACCTTT (
6
)
2
0.002
P4.5 retina
TCTCAAAAAA
(
22
)
2
0.002
P6.5 retina
CAGGTGAGCG (
5
)
10
0.01
P6.5 retina
TGTTTGGAGC
(
6
)
5
0.005
P6.5 retina
TCTCAAAAAA
(
22
)
3.3
0.0033
P6.5 retina
AGGGCTGTGT (
7
)
1.7
0.0017
P6.5 retina
ATCCTGGAGA (
4
)
1.7
0.0017
P6.5 retina
CAGACCAGCA (
7
)
1.7
0.0017
P6.5 retina
CAGGGTGAGC
(
3
)
1.7
0.0017
P6.5 retina
GAAGACCTTT (
6
)
1.7
0.0017
P6.5 retina
GAATCCCAGC
(
8
)
1.7
0.0017
P6.5 retina
TACACAATAT
(
2
)
1.7
0.0017
P10.5 crx- retina
CAGGTGAGCG (
5
)
42.7
0.0427
P10.5 crx- retina
TGTTTGGAGC
(
6
)
5.6
0.0056
P10.5 crx- retina
AGGGCTGTGT (
7
)
1.9
0.0019
P10.5 crx- retina
ATCCTGGAGA (
4
)
1.9
0.0019
P10.5 crx- retina
GAGGAAGAGG
(
8
)
1.9
0.0019
P10.5 crx- retina
TACACAATAT
(
2
)
1.9
0.0019
P10.5 crx+ retina
CAGGTGAGCG (
5
)
19.2
0.0192
P10.5 crx+ retina
TGTTTGGAGC
(
6
)
9.6
0.0096
P10.5 crx+ retina
TCTCAAAAAA
(
22
)
3.8
0.0038
P10.5 crx+ retina
GAAGACCTTT (
6
)
1.9
0.0019
P10.5 crx+ retina
GAATCCCAGC
(
8
)
1.9
0.0019
P10.5 crx+ retina
GGGGGTGGCT
(
2
)
1.9
0.0019
Adult retinal
AGGGCTGTGT (
7
)
33.3
0.0333
Adult retinal
CAGGTGAGCG (
5
)
11.1
0.0111
Adult retinal
TCTCAAAAAA
(
22
)
7.4
0.0074
Adult retinal
TGCTGCTGAC (
5
)
1.9
0.0019
ONL
AGGGCTGTGT (
7
)
7.7
0.0077
ONL
CAGGTGAGCG (
5
)
7.7
0.0077
ONL
TCTCAAAAAA
(
22
)
7.7
0.0077
ONL
GAATCCCAGC
(
8
)
1.9
0.0019
ONL
GGGGGTGGCT
(
2
)
1.9
0.0019
ONL
TGTTAGGCTT
(
2
)
1.9
0.0019
ONL
TGTTTGGAGC
(
6
)
1.9
0.0019
