Mouse Retina SAGE Library
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Gene: 
Accession: 
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag: 
Cytoband (Mm): 
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene: 
Cytoband (Hs): 
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.153061
1700023D09Rik
RIKEN cDNA 1700023D09 gene
19
69445
Mm.153061
Stx5a
syntaxin 5A
19
56389
Mm.153061
B930096F20Rik
RIKEN cDNA B930096F20 gene
19
319332
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 99 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TGGTTGCTGG (
369
)
68.5
0.0685
P8 Cb GC
CCTTTAATCC (
355
)
52.2
0.0522
P8 Cb GC
GAGGGCTTGG
(
9
)
29.4
0.0294
P8 Cb GC
CTGCAGCCTA
(
6
)
16.3
0.0163
Cb medulloblastoma
TGGTTGCTGG (
369
)
113.3
0.1133
Cb medulloblastoma
CCTTTAATCC (
355
)
41.6
0.0416
Cb medulloblastoma
GAGGGCTTGG
(
9
)
23.1
0.0231
Cb medulloblastoma
CTGCAGCCTA
(
6
)
13.9
0.0139
P8 GC+1d culture
TGGTTGCTGG (
369
)
57.1
0.0571
P8 GC+1d culture
CCTTTAATCC (
355
)
32
0.032
P8 GC+1d culture
CTGCAGCCTA
(
6
)
9.1
0.0091
P8 GC+1d culture
GAGGGCTTGG
(
9
)
9.1
0.0091
P8 GC+1d culture
TGGTTTCGTT (
4
)
1.1
0.0011
P8 GC+SHH+1d culture
TGGTTGCTGG (
369
)
89
0.089
P8 GC+SHH+1d culture
CCTTTAATCC (
355
)
25.8
0.0258
P8 GC+SHH+1d culture
CTGCAGCCTA
(
6
)
16.4
0.0164
P8 GC+SHH+1d culture
GAGGGCTTGG
(
9
)
16.4
0.0164
P8 GC+SHH+1d culture
TGGTTTCGTT (
4
)
2.3
0.0023
3T3 fibroblasts
TGGTTGCTGG (
369
)
220.8
0.2208
3T3 fibroblasts
CCTTTAATCC (
355
)
70.1
0.0701
3T3 fibroblasts
GAGGGCTTGG
(
9
)
35
0.035
3T3 fibroblasts
CTGCAGCCTA
(
6
)
17.5
0.0175
E15 cortex
TGGTTGCTGG (
369
)
277.1
0.2771
E15 cortex
CCTTTAATCC (
355
)
54.4
0.0544
E15 cortex
GAGGGCTTGG
(
9
)
24.7
0.0247
P1 cortex
CCTTTAATCC (
355
)
154.5
0.1545
P1 cortex
TGGTTGCTGG (
369
)
86.4
0.0864
P1 cortex
GAGGGCTTGG
(
9
)
13.6
0.0136
Hypothalamus
TGGTTGCTGG (
369
)
349.6
0.3496
Hypothalamus
CTGCAGCCTA
(
6
)
21.7
0.0217
Hypothalamus
CCTTTAATCC (
355
)
19.9
0.0199
Hypothalamus
GAGGGCTTGG
(
9
)
10.9
0.0109
Hypothalamus
GTGAGGAGAA
(
4
)
3.6
0.0036
Hypothalamus
TGGTTTCGTT (
4
)
3.6
0.0036
Hypothalamus
ATAGCAGTGT (
7
)
1.8
0.0018
E12.5 retina
TGGTTGCTGG (
369
)
157.7
0.1577
E12.5 retina
CCTTTAATCC (
355
)
75.1
0.0751
E12.5 retina
GAGGGCTTGG
(
9
)
31.9
0.0319
E12.5 retina
CTGCAGCCTA
(
6
)
11.3
0.0113
E14.5 retina
TGGTTGCTGG (
369
)
936.5
0.9365
E14.5 retina
CCTTTAATCC (
355
)
120.3
0.1203
E14.5 retina
CTGCAGCCTA
(
6
)
7.3
0.0073
E14.5 retina
GAGGGCTTGG
(
9
)
7.3
0.0073
E16.5 retina
TGGTTGCTGG (
369
)
767.9
0.7679
E16.5 retina
CCTTTAATCC (
355
)
68.8
0.0688
E16.5 retina
CTGCAGCCTA
(
6
)
21.7
0.0217
E16.5 retina
GAGGGCTTGG
(
9
)
19.9
0.0199
E16.5 retina
GGAAAGATCT
(
6
)
3.6
0.0036
E16.5 retina
ATAGCAGTGT (
7
)
1.8
0.0018
E16.5 retina
GTGAGGAGAA
(
4
)
1.8
0.0018
E18.5 retina
TGGTTGCTGG (
369
)
252.8
0.2528
E18.5 retina
CTGCAGCCTA
(
6
)
34.6
0.0346
E18.5 retina
CCTTTAATCC (
355
)
23.6
0.0236
E18.5 retina
GAGGGCTTGG
(
9
)
16.4
0.0164
P0.5 retina
TGGTTGCTGG (
369
)
190.4
0.1904
P0.5 retina
CCTTTAATCC (
355
)
72.6
0.0726
P0.5 retina
GAGGGCTTGG
(
9
)
11.8
0.0118
P0.5 retina
CTGCAGCCTA
(
6
)
7.9
0.0079
P0.5 retina
TGAGGTGAGG
(
5
)
3.9
0.0039
P0.5 retina
ATAGCAGTGT (
7
)
2
0.002
P0.5 retina
TGGTTTCGTT (
4
)
2
0.002
P2.5 retina
TGGTTGCTGG (
369
)
165.4
0.1654
P2.5 retina
CCTTTAATCC (
355
)
70.4
0.0704
P2.5 retina
GAGGGCTTGG
(
9
)
24.6
0.0246
P2.5 retina
CTGCAGCCTA
(
6
)
21.1
0.0211
P2.5 retina
TGGTTTCGTT (
4
)
1.8
0.0018
P4.5 retina
TGGTTGCTGG (
369
)
150.6
0.1506
P4.5 retina
CCTTTAATCC (
355
)
43.6
0.0436
P4.5 retina
CTGCAGCCTA
(
6
)
23.8
0.0238
P4.5 retina
GAGGGCTTGG
(
9
)
11.9
0.0119
P6.5 retina
TGGTTGCTGG (
369
)
156.7
0.1567
P6.5 retina
CCTTTAATCC (
355
)
70
0.07
P6.5 retina
CTGCAGCCTA
(
6
)
20
0.02
P6.5 retina
GAGGGCTTGG
(
9
)
18.3
0.0183
P6.5 retina
GTGAGGAGAA
(
4
)
1.7
0.0017
P6.5 retina
TGAGGTGAGG
(
5
)
1.7
0.0017
P10.5 crx- retina
TGGTTGCTGG (
369
)
280.5
0.2805
P10.5 crx- retina
CCTTTAATCC (
355
)
63.2
0.0632
P10.5 crx- retina
GAGGGCTTGG
(
9
)
59.4
0.0594
P10.5 crx- retina
CTGCAGCCTA
(
6
)
20.4
0.0204
P10.5 crx- retina
GTGAGGAGAA
(
4
)
3.7
0.0037
P10.5 crx- retina
TGGTTTCGTT (
4
)
3.7
0.0037
P10.5 crx- retina
TGAGGTGAGG
(
5
)
1.9
0.0019
P10.5 crx+ retina
TGGTTGCTGG (
369
)
101.9
0.1019
P10.5 crx+ retina
CCTTTAATCC (
355
)
38.4
0.0384
P10.5 crx+ retina
GAGGGCTTGG
(
9
)
30.8
0.0308
P10.5 crx+ retina
CTGCAGCCTA
(
6
)
26.9
0.0269
P10.5 crx+ retina
ATAGCAGTGT (
7
)
1.9
0.0019
Adult retinal
TGGTTGCTGG (
369
)
214.8
0.2148
Adult retinal
CCTTTAATCC (
355
)
129.6
0.1296
Adult retinal
CTGCAGCCTA
(
6
)
13
0.013
Adult retinal
GAGGGCTTGG
(
9
)
11.1
0.0111
Adult retinal
TGGTTTCGTT (
4
)
3.7
0.0037
ONL
TGGTTGCTGG (
369
)
398.4
0.3984
ONL
CCTTTAATCC (
355
)
84.3
0.0843
ONL
CTGCAGCCTA
(
6
)
11.5
0.0115
ONL
GAGGGCTTGG
(
9
)
7.7
0.0077
ONL
ACAGTCAGGG
(
4
)
5.7
0.0057
ONL
GGAAAGATCT
(
6
)
3.8
0.0038