Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.153061
1700023D09Rik
RIKEN cDNA 1700023D09 gene
19
69445
Mm.153061
Stx5a
syntaxin 5A
19
56389
Mm.153061
B930096F20Rik
RIKEN cDNA B930096F20 gene
19
319332
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 48 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GAGGGCTTGG
(
4
)
29.4
0.0294
P8 Cb GC
CTGCAGCCTA
(
3
)
16.3
0.0163
Cb medulloblastoma
GAGGGCTTGG
(
4
)
23.1
0.0231
Cb medulloblastoma
CTGCAGCCTA
(
3
)
13.9
0.0139
P8 GC+1d culture
CTGCAGCCTA
(
3
)
9.1
0.0091
P8 GC+1d culture
GAGGGCTTGG
(
4
)
9.1
0.0091
P8 GC+SHH+1d culture
CTGCAGCCTA
(
3
)
16.4
0.0164
P8 GC+SHH+1d culture
GAGGGCTTGG
(
4
)
16.4
0.0164
3T3 fibroblasts
GAGGGCTTGG
(
4
)
35
0.035
3T3 fibroblasts
CTGCAGCCTA
(
3
)
17.5
0.0175
E15 cortex
GAGGGCTTGG
(
4
)
24.7
0.0247
P1 cortex
GAGGGCTTGG
(
4
)
13.6
0.0136
Hypothalamus
CTGCAGCCTA
(
3
)
21.7
0.0217
Hypothalamus
GAGGGCTTGG
(
4
)
10.9
0.0109
Hypothalamus
GTGAGGAGAA
(
3
)
3.6
0.0036
E12.5 retina
GAGGGCTTGG
(
4
)
31.9
0.0319
E12.5 retina
CTGCAGCCTA
(
3
)
11.3
0.0113
E14.5 retina
CTGCAGCCTA
(
3
)
7.3
0.0073
E14.5 retina
GAGGGCTTGG
(
4
)
7.3
0.0073
E16.5 retina
CTGCAGCCTA
(
3
)
21.7
0.0217
E16.5 retina
GAGGGCTTGG
(
4
)
19.9
0.0199
E16.5 retina
GGAAAGATCT
(
4
)
3.6
0.0036
E16.5 retina
GTGAGGAGAA
(
3
)
1.8
0.0018
E18.5 retina
CTGCAGCCTA
(
3
)
34.6
0.0346
E18.5 retina
GAGGGCTTGG
(
4
)
16.4
0.0164
P0.5 retina
GAGGGCTTGG
(
4
)
11.8
0.0118
P0.5 retina
CTGCAGCCTA
(
3
)
7.9
0.0079
P0.5 retina
TGAGGTGAGG
(
3
)
3.9
0.0039
P2.5 retina
GAGGGCTTGG
(
4
)
24.6
0.0246
P2.5 retina
CTGCAGCCTA
(
3
)
21.1
0.0211
P4.5 retina
CTGCAGCCTA
(
3
)
23.8
0.0238
P4.5 retina
GAGGGCTTGG
(
4
)
11.9
0.0119
P6.5 retina
CTGCAGCCTA
(
3
)
20
0.02
P6.5 retina
GAGGGCTTGG
(
4
)
18.3
0.0183
P6.5 retina
GTGAGGAGAA
(
3
)
1.7
0.0017
P6.5 retina
TGAGGTGAGG
(
3
)
1.7
0.0017
P10.5 crx- retina
GAGGGCTTGG
(
4
)
59.4
0.0594
P10.5 crx- retina
CTGCAGCCTA
(
3
)
20.4
0.0204
P10.5 crx- retina
GTGAGGAGAA
(
3
)
3.7
0.0037
P10.5 crx- retina
TGAGGTGAGG
(
3
)
1.9
0.0019
P10.5 crx+ retina
GAGGGCTTGG
(
4
)
30.8
0.0308
P10.5 crx+ retina
CTGCAGCCTA
(
3
)
26.9
0.0269
Adult retinal
CTGCAGCCTA
(
3
)
13
0.013
Adult retinal
GAGGGCTTGG
(
4
)
11.1
0.0111
ONL
CTGCAGCCTA
(
3
)
11.5
0.0115
ONL
GAGGGCTTGG
(
4
)
7.7
0.0077
ONL
ACAGTCAGGG
(
3
)
5.7
0.0057
ONL
GGAAAGATCT
(
4
)
3.8
0.0038
