Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.154136
D5Abb2e
DNA segment, Chr 5, Abbott 2 expressed
5
5 66.0 cM
27760
Mm.154136
2500003M10Rik
RIKEN cDNA 2500003M10 gene
3
66511
Mm.154136
D19Bwg0552e
DNA segment, Chr 19, Brigham & Women's Genetics 0552 expressed
19
19 5.0 cM
52861
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 80 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TTCGCCCTCC (
4
)
27.7
0.0277
P8 Cb GC
TGCTGCTCGT
(
5
)
13.1
0.0131
P8 Cb GC
AGAAGAAATC
(
4
)
3.3
0.0033
P8 Cb GC
AGAATGCCAA
(
5
)
1.6
0.0016
Cb medulloblastoma
TTCGCCCTCC (
4
)
20.8
0.0208
Cb medulloblastoma
TGCTGCTCGT
(
5
)
16.2
0.0162
Cb medulloblastoma
AGAATGCCAA
(
5
)
2.3
0.0023
P8 GC+1d culture
TGCTGCTCGT
(
5
)
32
0.032
P8 GC+1d culture
TTCGCCCTCC (
4
)
17.1
0.0171
P8 GC+1d culture
AGAAGAAATC
(
4
)
2.3
0.0023
P8 GC+1d culture
AGACAGAAAG
(
7
)
2.3
0.0023
P8 GC+1d culture
GAGGAAGAGG (
8
)
1.1
0.0011
P8 GC+1d culture
TATGCATCCA
(
3
)
1.1
0.0011
P8 GC+SHH+1d culture
TGCTGCTCGT
(
5
)
21.1
0.0211
P8 GC+SHH+1d culture
TTCGCCCTCC (
4
)
21.1
0.0211
P8 GC+SHH+1d culture
AGACATAAAG (
6
)
2.3
0.0023
P8 GC+SHH+1d culture
GCAAGACAGA (
13
)
1.2
0.0012
P8 GC+SHH+1d culture
TATGCATCCA
(
3
)
1.2
0.0012
P8 GC+SHH+1d culture
TGCTGCTCAG (
5
)
1.2
0.0012
3T3 fibroblasts
TGCTGCTCGT
(
5
)
17.5
0.0175
3T3 fibroblasts
TTCGCCCTCC (
4
)
7
0.007
3T3 fibroblasts
TATGCATCCA
(
3
)
3.5
0.0035
E15 cortex
TGCTGCTCGT
(
5
)
19.8
0.0198
E15 cortex
GAGGAAGAGG (
8
)
9.9
0.0099
E15 cortex
AGACAGAAAG
(
7
)
4.9
0.0049
E15 cortex
TTCGCCCTCC (
4
)
4.9
0.0049
P1 cortex
TGCTGCTCGT
(
5
)
9.1
0.0091
P1 cortex
GAGGAAGAGG (
8
)
4.5
0.0045
Hypothalamus
TGCTGCTCGT
(
5
)
12.7
0.0127
Hypothalamus
TTCGCCCTCC (
4
)
5.4
0.0054
E12.5 retina
TGCTGCTCGT
(
5
)
20.7
0.0207
E12.5 retina
GAGGAAGAGG (
8
)
3.8
0.0038
E12.5 retina
TATGCATCCA
(
3
)
3.8
0.0038
E12.5 retina
AGAAGAAATC
(
4
)
1.9
0.0019
E12.5 retina
AGACATAAAG (
6
)
1.9
0.0019
E14.5 retina
TGCTGCTCGT
(
5
)
14.6
0.0146
E14.5 retina
GAGGAAGAGG (
8
)
1.8
0.0018
E14.5 retina
TGCTGCTCAG (
5
)
1.8
0.0018
E14.5 retina
TTCGCCCTCC (
4
)
1.8
0.0018
E16.5 retina
TGCTGCTCGT
(
5
)
9.1
0.0091
E16.5 retina
TGCTGCTCAG (
5
)
3.6
0.0036
E16.5 retina
TTCGCCCTCC (
4
)
3.6
0.0036
E18.5 retina
TGCTGCTCGT
(
5
)
23.6
0.0236
E18.5 retina
AGAAGAAATC
(
4
)
3.6
0.0036
E18.5 retina
AGACATAAAG (
6
)
1.8
0.0018
E18.5 retina
AGCCCTTCCC
(
5
)
1.8
0.0018
E18.5 retina
TATGCATCCA
(
3
)
1.8
0.0018
E18.5 retina
TTCGCCCTCC (
4
)
1.8
0.0018
P0.5 retina
TGCTGCTCGT
(
5
)
19.6
0.0196
P0.5 retina
TTCGCCCTCC (
4
)
7.9
0.0079
P0.5 retina
AGAAGAAATC
(
4
)
3.9
0.0039
P0.5 retina
AGACAGAAAG
(
7
)
3.9
0.0039
P0.5 retina
AGAATGCCAA
(
5
)
2
0.002
P0.5 retina
AGACATAAAG (
6
)
2
0.002
P0.5 retina
GAGGAAGAGG (
8
)
2
0.002
P0.5 retina
TATGCATCCA
(
3
)
2
0.002
P2.5 retina
TTCGCCCTCC (
4
)
37
0.037
P2.5 retina
TGCTGCTCGT
(
5
)
24.6
0.0246
P2.5 retina
AGACAGAAAG
(
7
)
3.5
0.0035
P2.5 retina
AGCCCTTCCC
(
5
)
1.8
0.0018
P4.5 retina
TTCGCCCTCC (
4
)
25.8
0.0258
P4.5 retina
TGCTGCTCGT
(
5
)
11.9
0.0119
P4.5 retina
AGCCCTTCCC
(
5
)
2
0.002
P6.5 retina
TTCGCCCTCC (
4
)
45
0.045
P6.5 retina
TGCTGCTCGT
(
5
)
11.7
0.0117
P6.5 retina
AGACAGAAAG
(
7
)
3.3
0.0033
P6.5 retina
AGAAGAAATC
(
4
)
1.7
0.0017
P6.5 retina
TATGCATCCA
(
3
)
1.7
0.0017
P10.5 crx- retina
TGCTGCTCGT
(
5
)
24.2
0.0242
P10.5 crx- retina
TTCGCCCTCC (
4
)
16.7
0.0167
P10.5 crx- retina
GAGGAAGAGG (
8
)
1.9
0.0019
P10.5 crx+ retina
TGCTGCTCGT
(
5
)
26.9
0.0269
P10.5 crx+ retina
TTCGCCCTCC (
4
)
23.1
0.0231
P10.5 crx+ retina
GCAAGACAGA (
13
)
3.8
0.0038
P10.5 crx+ retina
AGCCCTTCCC
(
5
)
1.9
0.0019
Adult retinal
TGCTGCTCGT
(
5
)
22.2
0.0222
Adult retinal
TTCGCCCTCC (
4
)
3.7
0.0037
ONL
AGACAGAAAG
(
7
)
5.7
0.0057
ONL
TGCTGCTCGT
(
5
)
3.8
0.0038
ONL
TTCGCCCTCC (
4
)
3.8
0.0038
