Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.158700	AA986891	expressed sequence AA986891	13		105108
Mm.158700	Cspg2	chondroitin sulfate proteoglycan 2	13	13 55.0 cM	13003
Gene Ontology	calcium ion binding | cell adhesion | extracellular matrix | hyaluronic acid binding | sugar binding
Human Homolog	CSPG2[chondroitin sulfate proteoglycan 2 (versican)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 86 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GATTCCTCAC (5) 26.1 0.0261 P8 Cb GC AACATTCAAA (4) 3.3 0.0033 P8 Cb GC TATGAATGCT (5) 3.3 0.0033 P8 Cb GC AATAAAGATA (2) 1.6 0.0016 P8 Cb GC GATTTCTGGA (3) 1.6 0.0016 P8 Cb GC TATAGTGTAA (2) 1.6 0.0016 Cb medulloblastoma AATAAAGATA (2) 11.6 0.0116 Cb medulloblastoma GATTCCTCAC (5) 9.2 0.0092 Cb medulloblastoma TCCTCAGCTG (5) 2.3 0.0023 P8 GC+1d culture GATTCCTCAC (5) 14.8 0.0148 P8 GC+1d culture TCCTCAGCTG (5) 3.4 0.0034 P8 GC+1d culture AACATTCAAA (4) 2.3 0.0023 P8 GC+1d culture AATAAAGATA (2) 1.1 0.0011 P8 GC+1d culture GAATTTTGAA (8) 1.1 0.0011 P8 GC+1d culture TATAGTGTAA (2) 1.1 0.0011 P8 GC+1d culture TATGAATGCT (5) 1.1 0.0011 P8 GC+SHH+1d culture GATTCCTCAC (5) 44.5 0.0445 P8 GC+SHH+1d culture AATAAAGATA (2) 8.2 0.0082 P8 GC+SHH+1d culture GAATTTTGAA (8) 3.5 0.0035 P8 GC+SHH+1d culture TCCTCAGCTG (5) 3.5 0.0035 P8 GC+SHH+1d culture AACATTCAAA (4) 1.2 0.0012 P8 GC+SHH+1d culture TATAGTGTAA (2) 1.2 0.0012 3T3 fibroblasts TATGAATGCT (5) 7 0.007 3T3 fibroblasts AACATTCAAA (4) 3.5 0.0035 E15 cortex GATTCCTCAC (5) 4.9 0.0049 E15 cortex TATAGTGTAA (2) 4.9 0.0049 P1 cortex TATAGTGTAA (2) 4.5 0.0045 P1 cortex TATGAATGCT (5) 4.5 0.0045 Hypothalamus AATAAAGATA (2) 7.2 0.0072 Hypothalamus AACACACACA (24) 5.4 0.0054 Hypothalamus GATTCCTCAC (5) 3.6 0.0036 Hypothalamus GATTTCTGGA (3) 3.6 0.0036 Hypothalamus AACATACAAA (10) 1.8 0.0018 Hypothalamus AACATTCAAA (4) 1.8 0.0018 Hypothalamus GAATTTTGAA (8) 1.8 0.0018 E12.5 retina GATTCCTCAC (5) 7.5 0.0075 E12.5 retina AACATTCAAA (4) 1.9 0.0019 E12.5 retina AATAAAGATA (2) 1.9 0.0019 E12.5 retina TATAGTGTAA (2) 1.9 0.0019 E14.5 retina GATTCCTCAC (5) 7.3 0.0073 E14.5 retina AACACACACA (24) 1.8 0.0018 E14.5 retina AATAAAGATA (2) 1.8 0.0018 E14.5 retina TATGAATGCT (5) 1.8 0.0018 E16.5 retina GAATTTTGAA (8) 5.4 0.0054 E16.5 retina GATTCCTCAC (5) 5.4 0.0054 E16.5 retina TCCTCAGCTG (5) 3.6 0.0036 E16.5 retina AACACACACA (24) 1.8 0.0018 E16.5 retina AATAAAGATA (2) 1.8 0.0018 E18.5 retina GATTCCTCAC (5) 9.1 0.0091 E18.5 retina AATAAAGATA (2) 1.8 0.0018 E18.5 retina GAATTTTGAA (8) 1.8 0.0018 E18.5 retina TATAGTGTAA (2) 1.8 0.0018 E18.5 retina TATGAATGCT (5) 1.8 0.0018 P0.5 retina GATTCCTCAC (5) 7.9 0.0079 P0.5 retina TCCTCAGCTG (5) 3.9 0.0039 P0.5 retina AACATACAAA (10) 2 0.002 P0.5 retina TATGAATGCT (5) 2 0.002 P2.5 retina AATAAAGATA (2) 12.3 0.0123 P2.5 retina GATTCCTCAC (5) 8.8 0.0088 P4.5 retina GATTCCTCAC (5) 11.9 0.0119 P4.5 retina AATAAAGATA (2) 5.9 0.0059 P4.5 retina AACACACACA (24) 2 0.002 P4.5 retina AACATACAAA (10) 2 0.002 P4.5 retina TATGAATGCT (5) 2 0.002 P4.5 retina TCCTCAGCTG (5) 2 0.002 P6.5 retina GATTCCTCAC (5) 5 0.005 P6.5 retina AATAAAGATA (2) 3.3 0.0033 P6.5 retina TCCTCAGCTG (5) 3.3 0.0033 P6.5 retina AACACACACA (24) 1.7 0.0017 P10.5 crx- retina AATAAAGATA (2) 3.7 0.0037 P10.5 crx- retina GAATTTTGAA (8) 1.9 0.0019 P10.5 crx- retina GATTCCTCAC (5) 1.9 0.0019 P10.5 crx- retina TATAGTGTAA (2) 1.9 0.0019 P10.5 crx- retina TCCTCAGCTG (5) 1.9 0.0019 P10.5 crx+ retina GATTCCTCAC (5) 9.6 0.0096 P10.5 crx+ retina GAATTTTGAA (8) 3.8 0.0038 P10.5 crx+ retina AACACACACA (24) 1.9 0.0019 P10.5 crx+ retina AACATTCAAA (4) 1.9 0.0019 Adult retinal TCCTCAGCTG (5) 11.1 0.0111 Adult retinal AACACACACA (24) 3.7 0.0037 Adult retinal AATAAAGATA (2) 1.9 0.0019 Adult retinal GAATTTTGAA (8) 1.9 0.0019 ONL TCCTCAGCTG (5) 7.7 0.0077 ONL AACACACACA (24) 3.8 0.0038 ONL AACATACAAA (10) 3.8 0.0038 ONL TATGAATGCT (5) 1.9 0.0019