Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.167971	Usp12	ubiquitin specific protease 12	5		22217
Gene Ontology	cysteine-type endopeptidase activity | cysteine-type peptidase activity | hydrolase activity | peptidase activity | protein modification | ubiquitin thiolesterase activity | ubiquitin-dependent protein catabolism
Human Homolog	USP12[ubiquitin specific protease 12]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 141 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCCTAATGTA 230 0.23 P8 Cb GC TACTGTCCTG 14.7 0.0147 P8 Cb GC GCCCCCGCAT (2) 13.1 0.0131 P8 Cb GC CCGTGGGCAT 3.3 0.0033 P8 Cb GC AGGCACAGTG (2) 1.6 0.0016 P8 Cb GC CCGAGTCAGC (2) 1.6 0.0016 P8 Cb GC GCGGGGGGGG (2) 1.6 0.0016 P8 Cb GC GCTTAATGTA (2) 1.6 0.0016 Cb medulloblastoma GCCTAATGTA 64.7 0.0647 Cb medulloblastoma GCTTAATGTA (2) 9.2 0.0092 Cb medulloblastoma TACTGTCCTG 6.9 0.0069 Cb medulloblastoma AATTCGTATG 4.6 0.0046 Cb medulloblastoma AGGCACAGTG (2) 2.3 0.0023 Cb medulloblastoma CCGTGGGCAT 2.3 0.0023 Cb medulloblastoma GCCCCCGCAT (2) 2.3 0.0023 Cb medulloblastoma GCGGGGGGGG (2) 2.3 0.0023 Cb medulloblastoma TACTTTCCTG 2.3 0.0023 P8 GC+1d culture GCCTAATGTA 223.7 0.2237 P8 GC+1d culture TACTGTCCTG 11.4 0.0114 P8 GC+1d culture GCCCCCGCAT (2) 8 0.008 P8 GC+1d culture AGGCACAGTG (2) 4.6 0.0046 P8 GC+1d culture ATGGCCGTAG 4.6 0.0046 P8 GC+1d culture CCGTGGGCAT 2.3 0.0023 P8 GC+1d culture GCCCCCCGCA (2) 1.1 0.0011 P8 GC+1d culture GCCTAGTGTA 1.1 0.0011 P8 GC+1d culture GCTTAATGTA (2) 1.1 0.0011 P8 GC+SHH+1d culture GCCTAATGTA 207.3 0.2073 P8 GC+SHH+1d culture GCCCCCGCAT (2) 14.1 0.0141 P8 GC+SHH+1d culture TACTGTCCTG 8.2 0.0082 P8 GC+SHH+1d culture AGGCACAGTG (2) 4.7 0.0047 P8 GC+SHH+1d culture AATTCGTATG 1.2 0.0012 P8 GC+SHH+1d culture AGACTCTGTT (2) 1.2 0.0012 P8 GC+SHH+1d culture CCGTGGGCAT 1.2 0.0012 P8 GC+SHH+1d culture GCCTAGTGTA 1.2 0.0012 3T3 fibroblasts GCCTAATGTA 73.6 0.0736 3T3 fibroblasts GCCCCCCGCA (2) 17.5 0.0175 3T3 fibroblasts AGGCACAGTG (2) 10.5 0.0105 3T3 fibroblasts ATGGCCGTAG 10.5 0.0105 3T3 fibroblasts CCGTGGGCAT 10.5 0.0105 3T3 fibroblasts CCGAGTCAGC (2) 3.5 0.0035 E15 cortex CCGTGGGCAT 14.8 0.0148 E15 cortex GCCTAATGTA 9.9 0.0099 E15 cortex GCCCCCGCAT (2) 4.9 0.0049 P1 cortex GCCTAATGTA 72.7 0.0727 P1 cortex ATGGCCGTAG 9.1 0.0091 P1 cortex CCGTGGGCAT 9.1 0.0091 P1 cortex CCGAGTCAGC (2) 4.5 0.0045 P1 cortex GCCCCCGCAT (2) 4.5 0.0045 Hypothalamus GCCTAATGTA 222.8 0.2228 Hypothalamus GCCCCCGCAT (2) 9.1 0.0091 Hypothalamus AATTCGTATG 7.2 0.0072 Hypothalamus TACTGTCCTG 5.4 0.0054 Hypothalamus CCGTGGGCAT 3.6 0.0036 Hypothalamus ATGGCCGTAG 1.8 0.0018 Hypothalamus CGAATCTACA 1.8 0.0018 Hypothalamus CTGGGTGACA (2) 1.8 0.0018 Hypothalamus TACTTTCCTG 1.8 0.0018 E12.5 retina GCCTAATGTA 403.6 0.4036 E12.5 retina GCCCCCGCAT (2) 3.8 0.0038 E12.5 retina TACTGTCCTG 3.8 0.0038 E12.5 retina AATTCGTATG 1.9 0.0019 E12.5 retina ATGGCCGTAG 1.9 0.0019 E12.5 retina CCGTGGGCAT 1.9 0.0019 E12.5 retina GCGGGGGGGG (2) 1.9 0.0019 E14.5 retina GCCTAATGTA 300.6 0.3006 E14.5 retina AATTCGTATG 20 0.02 E14.5 retina AGGCACAGTG (2) 3.6 0.0036 E14.5 retina CCGTGGGCAT 3.6 0.0036 E14.5 retina TACTGTCCTG 3.6 0.0036 E14.5 retina GCTTAATGTA (2) 1.8 0.0018 E16.5 retina GCCTAATGTA 264.4 0.2644 E16.5 retina CCGTGGGCAT 19.9 0.0199 E16.5 retina AATTCGTATG 14.5 0.0145 E16.5 retina CGAATCTACA 7.2 0.0072 E16.5 retina GCCCCCGCAT (2) 5.4 0.0054 E16.5 retina TACTGTCCTG 5.4 0.0054 E16.5 retina AGGCACAGTG (2) 1.8 0.0018 E16.5 retina CCGAGTCAGC (2) 1.8 0.0018 E18.5 retina GCCTAATGTA 281.9 0.2819 E18.5 retina GCCCCCGCAT (2) 7.3 0.0073 E18.5 retina TACTGTCCTG 3.6 0.0036 E18.5 retina AGACTCTGTT (2) 1.8 0.0018 E18.5 retina CCGTGGGCAT 1.8 0.0018 E18.5 retina CGAATCTACA 1.8 0.0018 P0.5 retina GCCTAATGTA 155 0.155 P0.5 retina GCTTAATGTA (2) 5.9 0.0059 P0.5 retina AGGCACAGTG (2) 3.9 0.0039 P0.5 retina GCCCCCGCAT (2) 3.9 0.0039 P0.5 retina AATTCGTATG 2 0.002 P0.5 retina CCGTGGGCAT 2 0.002 P2.5 retina GCCTAATGTA 248.1 0.2481 P2.5 retina GCCCCCGCAT (2) 7 0.007 P2.5 retina AATTCGTATG 1.8 0.0018 P2.5 retina AGACTCTGTT (2) 1.8 0.0018 P2.5 retina AGGCACAGTG (2) 1.8 0.0018 P2.5 retina ATGGCCGTAG 1.8 0.0018 P2.5 retina GCCTAGTGTA 1.8 0.0018 P2.5 retina GCTTAATGTA (2) 1.8 0.0018 P2.5 retina TACTGTCCTG 1.8 0.0018 P4.5 retina GCCTAATGTA 255.6 0.2556 P4.5 retina TACTGTCCTG 7.9 0.0079 P4.5 retina AATTCGTATG 5.9 0.0059 P4.5 retina CCGTGGGCAT 5.9 0.0059 P4.5 retina AGGCACAGTG (2) 2 0.002 P4.5 retina GCCCCCGCAT (2) 2 0.002 P6.5 retina GCCTAATGTA 176.7 0.1767 P6.5 retina ATGGCCGTAG 6.7 0.0067 P6.5 retina GCCCCCGCAT (2) 6.7 0.0067 P6.5 retina TACTGTCCTG 5 0.005 P6.5 retina AATTCGTATG 1.7 0.0017 P6.5 retina CCGTGGGCAT 1.7 0.0017 P6.5 retina GCCTAGTGTA 1.7 0.0017 P6.5 retina GCGGGGGGGG (2) 1.7 0.0017 P6.5 retina GCTTAATGTA (2) 1.7 0.0017 P10.5 crx- retina GCCTAATGTA 109.6 0.1096 P10.5 crx- retina AATTCGTATG 14.9 0.0149 P10.5 crx- retina GCCCCCGCAT (2) 9.3 0.0093 P10.5 crx- retina GCTTAATGTA (2) 5.6 0.0056 P10.5 crx- retina CCGTGGGCAT 3.7 0.0037 P10.5 crx- retina ATGGCCGTAG 1.9 0.0019 P10.5 crx- retina CGAATCTACA 1.9 0.0019 P10.5 crx+ retina GCCTAATGTA 146.1 0.1461 P10.5 crx+ retina ATGGCCGTAG 11.5 0.0115 P10.5 crx+ retina GCCCCCGCAT (2) 5.8 0.0058 P10.5 crx+ retina GCTTAATGTA (2) 3.8 0.0038 P10.5 crx+ retina AGGCACAGTG (2) 1.9 0.0019 P10.5 crx+ retina CTGGGTGACA (2) 1.9 0.0019 P10.5 crx+ retina GCGGGGGGGG (2) 1.9 0.0019 P10.5 crx+ retina TACTTTCCTG 1.9 0.0019 Adult retinal GCCTAATGTA 85.2 0.0852 Adult retinal ATGGCCGTAG 3.7 0.0037 Adult retinal AATTCGTATG 1.9 0.0019 Adult retinal AGGCACAGTG (2) 1.9 0.0019 Adult retinal CTGGGTGACA (2) 1.9 0.0019 Adult retinal GCCCCCGCAT (2) 1.9 0.0019 Adult retinal TACTGTCCTG 1.9 0.0019 ONL GCCTAATGTA 63.2 0.0632 ONL ATGGCCGTAG 5.7 0.0057 ONL AGACTCTGTT (2) 1.9 0.0019 ONL CTGGGTGACA (2) 1.9 0.0019 ONL TACTGTCCTG 1.9 0.0019