Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.1761	Clk1	CDC-like kinase 1	1	1 C1.3 (1 30.1 cM)	12747
Gene Ontology	ATP binding | autophosphorylation | nucleus | peptidyl-serine phosphorylation | peptidyl-threonine phosphorylation | peptidyl-tyrosine phosphorylation | protein amino acid phosphorylation | protein kinase activity | protein serine/threonine kinase activity | protein-tyrosine kinase activity | transferase activity
Human Homolog	CLK1[CDC-like kinase 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 13 In Situ Hybridization Images

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SAGE Tags

Total 154 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC GCCAAACCAA (5) 19.6 0.0196 P8 Cb GC GTAGCTCACA (30) 16.3 0.0163 P8 Cb GC TATTAATAAA (8) 6.5 0.0065 P8 Cb GC GGGACAGAAC (3) 4.9 0.0049 P8 Cb GC GTTCTCATTT (3) 4.9 0.0049 P8 Cb GC TATTTAATTT (4) 4.9 0.0049 P8 Cb GC GAGAAGCAGC (13) 1.6 0.0016 P8 Cb GC TTTTTCTCCT (2) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma TATTAATAAA (8) 32.4 0.0324 Cb medulloblastoma GCCAAACCAA (5) 18.5 0.0185 Cb medulloblastoma GTAGCTCACA (30) 18.5 0.0185 Cb medulloblastoma GGTACCAATT (3) 4.6 0.0046 Cb medulloblastoma ACAAATAAAA (2) 2.3 0.0023 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture GTAGCTCACA (30) 27.4 0.0274 P8 GC+1d culture GCCAAACCAA (5) 12.6 0.0126 P8 GC+1d culture TATTTAATTT (4) 4.6 0.0046 P8 GC+1d culture CCCCAACCAG (2) 1.1 0.0011 P8 GC+1d culture GGTACCAATT (3) 1.1 0.0011 P8 GC+1d culture TATTAATAAA (8) 1.1 0.0011 P8 GC+1d culture TTCGGCATCC 1.1 0.0011 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture GTAGCTCACA (30) 15.2 0.0152 P8 GC+SHH+1d culture GCCAAACCAA (5) 8.2 0.0082 P8 GC+SHH+1d culture TATTAATAAA (8) 2.3 0.0023 P8 GC+SHH+1d culture TATTTAATTT (4) 2.3 0.0023 P8 GC+SHH+1d culture ACAAATAAAA (2) 1.2 0.0012 P8 GC+SHH+1d culture GAGAAGCAGG (4) 1.2 0.0012 P8 GC+SHH+1d culture GTTCTCATTT (3) 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts GTAGCTCACA (30) 14 0.014 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts GGCTACGAGC (3) 3.5 0.0035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex GTAGCTCACA (30) 29.7 0.0297 E15 cortex GCCAAACCAA (5) 24.7 0.0247 E15 cortex GAGAAGCAGC (13) 4.9 0.0049 E15 cortex GTCATAGCTG (590) 4.9 0.0049 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex GTAGCTCACA (30) 13.6 0.0136 P1 cortex TATTAATAAA (8) 13.6 0.0136 P1 cortex ATGGTGCACA (4) 4.5 0.0045 P1 cortex GCCAAACCAA (5) 4.5 0.0045 P1 cortex GGGACAGAAC (3) 4.5 0.0045 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus TATTAATAAA (8) 45.3 0.0453 Hypothalamus GTAGCTCACA (30) 29 0.029 Hypothalamus GCCAAACCAA (5) 7.2 0.0072 Hypothalamus TTTTTCTCCT (2) 3.6 0.0036 Hypothalamus TATTTAATAA (2) 1.8 0.0018 Hypothalamus TATTTAATTT (4) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina GCCAAACCAA (5) 35.7 0.0357 E12.5 retina GTAGCTCACA (30) 30 0.03 E12.5 retina AGCTTCTCTT (3) 1.9 0.0019 E12.5 retina GAGAAGCAGC (13) 1.9 0.0019 E12.5 retina GGTACCAATT (3) 1.9 0.0019 E12.5 retina TATTAATAAA (8) 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina GTAGCTCACA (30) 31 0.031 E14.5 retina GCCAAACCAA (5) 16.4 0.0164 E14.5 retina TATTTAATTT (4) 3.6 0.0036 E14.5 retina ATGGTGCACA (4) 1.8 0.0018 E14.5 retina TATTAATAAA (8) 1.8 0.0018 E14.5 retina TATTTAATAA (2) 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina GTAGCTCACA (30) 41.7 0.0417 E16.5 retina GCCAAACCAA (5) 25.4 0.0254 E16.5 retina TATTAATAAA (8) 16.3 0.0163 E16.5 retina AATGAACAAA (6) 1.8 0.0018 E16.5 retina GGCTACGAGC (3) 1.8 0.0018 E16.5 retina GGTACCAATT (3) 1.8 0.0018 E16.5 retina GTTCTCATTT (3) 1.8 0.0018 E16.5 retina TATTTAATTT (4) 1.8 0.0018 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina GCCAAACCAA (5) 41.8 0.0418 E18.5 retina GTAGCTCACA (30) 16.4 0.0164 E18.5 retina TATTAATAAA (8) 7.3 0.0073 E18.5 retina TATTTAATTT (4) 7.3 0.0073 E18.5 retina GGCTACGAGC (3) 1.8 0.0018 E18.5 retina GGTACCAATT (3) 1.8 0.0018 E18.5 retina GTTCTCATTT (3) 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina GTAGCTCACA (30) 25.5 0.0255 P0.5 retina GCCAAACCAA (5) 19.6 0.0196 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina CCCCAACCAG (2) 2 0.002 P0.5 retina TATTAATAAA (8) 2 0.002 P0.5 retina TTCGGCATCC 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina GCCAAACCAA (5) 37 0.037 P2.5 retina GTAGCTCACA (30) 22.9 0.0229 P2.5 retina TATTAATAAA (8) 5.3 0.0053 P2.5 retina AATGAACAAA (6) 1.8 0.0018 P2.5 retina ATAGCAAGGA 1.8 0.0018 P2.5 retina ATGGTGCACA (4) 1.8 0.0018 P2.5 retina GGTACCAATT (3) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina TATTTAATAA (2) 1.8 0.0018 P2.5 retina TATTTAATTT (4) 1.8 0.0018 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina GCCAAACCAA (5) 31.7 0.0317 P4.5 retina GTAGCTCACA (30) 25.8 0.0258 P4.5 retina TATTAATAAA (8) 15.9 0.0159 P4.5 retina TATTTAATAA (2) 5.9 0.0059 P4.5 retina ACAAATAAAA (2) 4 0.004 P4.5 retina TATTTAATTT (4) 4 0.004 P4.5 retina AGCTTCTCTT (3) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina GTTCTCATTT (3) 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina GCCAAACCAA (5) 23.3 0.0233 P6.5 retina GTAGCTCACA (30) 18.3 0.0183 P6.5 retina TATTAATAAA (8) 16.7 0.0167 P6.5 retina AATGAACAAA (6) 3.3 0.0033 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina GTTCTCATTT (3) 3.3 0.0033 P6.5 retina ATAGCAAGGA 1.7 0.0017 P6.5 retina ATGGTGCACA (4) 1.7 0.0017 P6.5 retina TTTTTCTCCT (2) 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina GCCAAACCAA (5) 35.3 0.0353 P10.5 crx- retina GTAGCTCACA (30) 16.7 0.0167 P10.5 crx- retina TATTAATAAA (8) 9.3 0.0093 P10.5 crx- retina AGCTTCTCTT (3) 5.6 0.0056 P10.5 crx- retina TATTTAATTT (4) 3.7 0.0037 P10.5 crx- retina AATGAACAAA (6) 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina GCCAAACCAA (5) 67.3 0.0673 P10.5 crx+ retina GTAGCTCACA (30) 28.8 0.0288 P10.5 crx+ retina TATTAATAAA (8) 9.6 0.0096 P10.5 crx+ retina ATAGCAAGGA 1.9 0.0019 P10.5 crx+ retina ATGGTGCACA (4) 1.9 0.0019 P10.5 crx+ retina TTCGGCATCC 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal GCCAAACCAA (5) 31.5 0.0315 Adult retinal GTAGCTCACA (30) 16.7 0.0167 Adult retinal CCCCAACCAG (2) 3.7 0.0037 Adult retinal TATTAATAAA (8) 3.7 0.0037 Adult retinal GAGAAGCAGC (13) 1.9 0.0019 Adult retinal GAGAAGCAGG (4) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal GTTCTCATTT (3) 1.9 0.0019 Adult retinal TATTTAATTT (4) 1.9 0.0019 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL GCCAAACCAA (5) 28.7 0.0287 ONL GTAGCTCACA (30) 24.9 0.0249 ONL TATTAATAAA (8) 15.3 0.0153 ONL TATTTAATTT (4) 7.7 0.0077 ONL GTCATAGCTG (590) 5.7 0.0057 ONL ATGGTGCACA (4) 1.9 0.0019 ONL GAGAAGCAGG (4) 1.9 0.0019