Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.203962	Bat3	HLA-B-associated transcript 3	17	17 19.03 cM	224727
Gene Ontology	apoptosis | cytoplasm | hydrogen transport | hydrogen-exporting ATPase activity, phosphorylative mechanism | membrane | protein binding | protein binding | regulation of apoptosis
Human Homolog	BAT3[HLA-B associated transcript 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 83 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTTGGAACCT (3) 4.9 0.0049 P8 Cb GC CCTGCCAAGA (2) 3.3 0.0033 P8 Cb GC GAGCCGAGTG 3.3 0.0033 P8 Cb GC CCTGTGGGTC (2) 1.6 0.0016 P8 Cb GC TGCTGCACTG 1.6 0.0016 Cb medulloblastoma CCTGCCAAGA (2) 4.6 0.0046 Cb medulloblastoma GCCATTTCCA 2.3 0.0023 Cb medulloblastoma TGCTGCACTG 2.3 0.0023 P8 GC+1d culture CCTGCCAAGA (2) 12.6 0.0126 P8 GC+1d culture GTTGGAACCT (3) 3.4 0.0034 P8 GC+1d culture GCTTCTCCCA (4) 2.3 0.0023 P8 GC+1d culture CCAATGAGGT (2) 1.1 0.0011 P8 GC+1d culture CCACTGAGGT 1.1 0.0011 P8 GC+1d culture CCTGTGGGTC (2) 1.1 0.0011 P8 GC+SHH+1d culture CCTGCCAAGA (2) 8.2 0.0082 P8 GC+SHH+1d culture GTTGGAACCT (3) 3.5 0.0035 P8 GC+SHH+1d culture CCACTGAGGT 1.2 0.0012 P8 GC+SHH+1d culture CCTGTGGGTC (2) 1.2 0.0012 P8 GC+SHH+1d culture GCTTCTCCCA (4) 1.2 0.0012 3T3 fibroblasts CCTGCCAAGA (2) 24.5 0.0245 3T3 fibroblasts GAGCCGAGTG 7 0.007 3T3 fibroblasts GTTGGAACCT (3) 3.5 0.0035 E15 cortex CCTGCCAAGA (2) 34.6 0.0346 E15 cortex CCTGTGGGTC (2) 9.9 0.0099 P1 cortex CCTGTGGGTC (2) 45.5 0.0455 P1 cortex CCTGCCAAGA (2) 18.2 0.0182 Hypothalamus CCTGTGGGTC (2) 18.1 0.0181 Hypothalamus CCACTGAGGT 1.8 0.0018 Hypothalamus CCTGCCAAGA (2) 1.8 0.0018 Hypothalamus GCCATTTCCA 1.8 0.0018 Hypothalamus GGAGTCAGAA 1.8 0.0018 E12.5 retina CCTGCCAAGA (2) 11.3 0.0113 E12.5 retina GTTGGAACCT (3) 3.8 0.0038 E12.5 retina CCTGCCAAAA (2) 1.9 0.0019 E12.5 retina CCTGTGGGTC (2) 1.9 0.0019 E14.5 retina GGAGTCAGAA 7.3 0.0073 E14.5 retina CCTGCCAAGA (2) 3.6 0.0036 E14.5 retina CCACTGAGGT 1.8 0.0018 E14.5 retina CCTGCCAAAA (2) 1.8 0.0018 E14.5 retina GCCATTTCCA 1.8 0.0018 E14.5 retina GCTTCTCCCA (4) 1.8 0.0018 E14.5 retina GTTGGAACCT (3) 1.8 0.0018 E16.5 retina CCTGCCAAGA (2) 16.3 0.0163 E16.5 retina GCTTCTCCCA (4) 3.6 0.0036 E16.5 retina CCTGCCAAAA (2) 1.8 0.0018 E16.5 retina CCTGTGGGTC (2) 1.8 0.0018 E18.5 retina CCTGCCAAGA (2) 5.5 0.0055 E18.5 retina CCTGTGGGTC (2) 1.8 0.0018 E18.5 retina GAGCCGAGTG 1.8 0.0018 E18.5 retina GTTGGAACCT (3) 1.8 0.0018 P0.5 retina CCTGCCAAGA (2) 21.6 0.0216 P0.5 retina CCTGTGGGTC (2) 3.9 0.0039 P0.5 retina GTTGGAACCT (3) 2 0.002 P2.5 retina CCTGCCAAGA (2) 10.6 0.0106 P2.5 retina CCTGTGGGTC (2) 1.8 0.0018 P4.5 retina GTTGGAACCT (3) 7.9 0.0079 P4.5 retina CCTGCCAAGA (2) 4 0.004 P4.5 retina CCAATGAGGT (2) 2 0.002 P4.5 retina CCACTGAGGT 2 0.002 P4.5 retina CCTGCCAAAA (2) 2 0.002 P4.5 retina CCTGTGGGTC (2) 2 0.002 P4.5 retina GGAGTCAGAA 2 0.002 P6.5 retina CCTGCCAAGA (2) 25 0.025 P6.5 retina CCTGTGGGTC (2) 5 0.005 P6.5 retina GCCATTTCCA 1.7 0.0017 P6.5 retina GTTGGAACCT (3) 1.7 0.0017 P10.5 crx- retina CCTGTGGGTC (2) 20.4 0.0204 P10.5 crx- retina CCTGCCAAGA (2) 9.3 0.0093 P10.5 crx- retina CCAATGAGGT (2) 1.9 0.0019 P10.5 crx- retina GGAGTCAGAA 1.9 0.0019 P10.5 crx+ retina CCTGTGGGTC (2) 3.8 0.0038 P10.5 crx+ retina GTTGGAACCT (3) 3.8 0.0038 P10.5 crx+ retina CCTGCCAAGA (2) 1.9 0.0019 Adult retinal CCTGTGGGTC (2) 16.7 0.0167 Adult retinal CCTGCCAAGA (2) 5.6 0.0056 Adult retinal GGAGTCAGAA 3.7 0.0037 Adult retinal GTTGGAACCT (3) 1.9 0.0019 Adult retinal TGCTGCACTG 1.9 0.0019 ONL CCTGCCAAGA (2) 9.6 0.0096 ONL GCCATTTCCA 3.8 0.0038 ONL CCTGTGGGTC (2) 1.9 0.0019 ONL GGAGTCAGAA 1.9 0.0019 ONL GTTGGAACCT (3) 1.9 0.0019